RNA id: TU2319611


Basic Information

Item Value
RNA id TU2319611
length 541
lncRNA type sense_over
GC content 0.54
exon number 2
gene id LOC110506757
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 38411123 ~ 38504156 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGCACCCCCTTGCCCCCCAGCAGAGCCCCTTCCCTACGGAGGGGGAGAGTGTGAACATCAAGCAGGAGCCGGAGGAGAGAGAGCCCACCTTCAGAACCATCGGCCTGCAGGACATCACACTGGACGACGTGAATGAGATCATCGGCAGAGACATGTCCCAGTCCCCTGGTGGCGGTGCCCAGTCGTAGCGCTGTCCGTGGCCAGGCATCCACACACCCAGCTGGGCATAGCAGTGTCTTCACCAGccccaacaccaccacctccaccacaggACTTTACCTGCCTCTAGGCAGGACAGACTGGGCTGAGATTCCCTTTTACACTTCATGGACCTACCAGTCCACAAAAAGACCCTCCAGACACACATGAACAAACCTTTCATTTACCCACATGACAGCAAAAGAGCTCAGATTCACCCACCtacacatgtacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttcccccacttaaaaaggtgagagaggcctgtaattttcatcgtaggtacacttcaactatgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2319610 lncRNA downstream 4081 38405183 ~ 38407051 (-) True G2028140
TU2319608 lncRNA downstream 54533 38355966 ~ 38356599 (-) True G2028138
TU2319604 lncRNA downstream 59900 38351011 ~ 38351232 (-) True G2028135
TU2319602 lncRNA downstream 62017 38348880 ~ 38349115 (-) True G2028133
TU2319587 lncRNA downstream 73876 38334242 ~ 38337256 (-) False LOC110506753
TU2319646 lncRNA upstream 7700 38431282 ~ 38434423 (-) True G2028172
TU2319671 lncRNA upstream 80987 38504569 ~ 38504856 (-) True G2028195
TU2319674 lncRNA upstream 83508 38507090 ~ 38507341 (-) True G2028198
TU2319779 lncRNA upstream 232112 38655694 ~ 38658754 (-) False G2028297
TU2319780 lncRNA upstream 232112 38655694 ~ 38695321 (-) True G2028297
XM_036963303.1 mRNA downstream 37372 38335951 ~ 38373760 (-) False LOC110506753
XM_021586598.2 mRNA downstream 62632 38335951 ~ 38348500 (-) False LOC110506753
XR_005039655.1 mRNA downstream 62632 38335951 ~ 38348500 (-) False LOC110506753
XR_005039656.1 mRNA downstream 62632 38335951 ~ 38348500 (-) False LOC110506753
XM_021586599.2 mRNA downstream 62899 38335951 ~ 38348233 (-) False LOC110506753
LOC110526638 mRNA upstream 378757 38802339 ~ 38819334 (-) True LOC110526638
XM_021586622.2 mRNA upstream 611362 39034944 ~ 39042496 (-) True LOC110506764
XR_002471030.2 mRNA upstream 629491 39053073 ~ 39054291 (-) True LOC110506767
XM_021586623.2 mRNA upstream 636718 39060300 ~ 39068583 (-) True LOC110506765
XM_021586604.2 mRNA upstream 660753 39084335 ~ 39102414 (-) False LOC110506758
TU2319582 other downstream 62776 38337853 ~ 38348356 (-) True LOC110506753
TU2318287 other downstream 919716 37490852 ~ 37491416 (-) True G2027052
TU2318224 other downstream 990095 37420411 ~ 37421037 (-) True G2026993
TU2317552 other downstream 1535029 36834733 ~ 36876103 (-) False LOC110506740
TU2319612 other upstream 57020 38480602 ~ 38504135 (-) True LOC110506757
TU2320352 other upstream 802781 39226363 ~ 39227059 (-) True G2028777
TU2320355 other upstream 805547 39229129 ~ 39230810 (-) False G2028779
TU2320356 other upstream 805547 39229129 ~ 39230514 (-) False G2028779
TU2321319 other upstream 1775234 40198816 ~ 40200815 (-) True pldn

Expression Profile