RNA id: TU2319779


Basic Information

Item Value
RNA id TU2319779
length 3036
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G2028297
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 38655694 ~ 38695321 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTATTTTCAGTGAATACAAAAAGAAGATGTTTTCTTGTGGCCAGATAAATAGTTTCCATACTGTAGGTCATTGTCACTTCATATCTATCTTTCTTGTAGAACTGCACTTTAATTATCATTGAATTCATTAtgagacaaacacacaggtaTTGTGTCACACTACATGAACAGTGACAGCTATACATCTTAATATCCTTATCACATTTATCCTTAAAACAACGATTCCTCGTGGcttaaaagagaaagaaaaaattAATTCAATCCATAAAACTTTTGCGAGACAGCAGAGTACAGACCTATTGTCCGGAGTGTGTGAATCCTATGATTTACTTGTAACATACAATAACCGAACGACAGACTCCATTCTGTCATAGATAGAGTTCAGAAGCATCTTGATACATGCCCATGGAATGCAGTACAAAAATGTGTTGTCTTCATATATATCATATACATATAGTGATGGTACTCTTTACACAGTGACACATTCGTCTCTGCCCTCAAGGCCATGGGTGCATCAGGCAGAAAGATGGGGACAGAGGTACAGTTTATAGGACAACGCAGTAGTACCTGTGAGGCCGTGTTTTTCATCTCTATGGGACCTAAACGTCTTGGTAATAGGCTATGACAGGAACAACTCAAGGCCCTACTCATTGATACTGACCACACTCCTTTATCCAGCTAGATAAGTTGTCACAAGCAGACCAGACGCTGTATGAGCTAGAGACTAAGGCACTAATGACATAATACTACAACAACCAGATGCGTGAACTCTGACAGAACTGTAGAGTCTACTGTTACACATCAATACGGAGTAAAACATGTTTAACATGGACCATTTGCAGTTTATTAGGGGTTATTGTCCTTATGTGCAGTTCAGAATACCAATACCATTCAGTGCGTCGTGTAGTTTAGAAAATAATTAGAACCCAGAAGCCATGCATATGACTGACACGCAAGAGCAGATCTTTACCTCACAATAATGATTTGTTTGCTAACCGATACTCACTGACTGTCCATAAAACTAGTAAAACCAAACGCTAGAACCaaacctgggttgtgttcattaggatttttttgttgttctaTTGGACAATTCTAGGTAATCCCTCCTCCGATTTCCTCCTTTCGGTGCATAATGAACACAAGCCTGGCAAACAGAAGGTAAATATACTGCAATAGTAGCACTTCTCACTACAGTTACACAAAGCACCATTAGAGTAAGAGTGAGACGGATTCAACAGGTGAAGAACAACAGGACATGATCCACTGTAGTGGTCCAACAGGCCGCtatggagggatgggggactCAGCCCCGTGTAAGACAGCAGGGGTAACCATCAGAAGCACAGTACATTGTGTATAGTCAACAAAGATTTACTGCTTCACATTCATTCAAGAGGTCTGGGGTGTTACAATATCAGAGCCATCCATTTCAGCTTGCATTATGAGTTGCAGAGAAATCACGCTTTATCAATGAGAATCTTTTCAGATTGCCTGGATGTTTTTTTAAAACTCCTACTTATATCGTAATACATTTTCAAGACCAGCAATTGTTTCCTACATTAGTATTTTTTCTTACAGTATCTGAACGGTTTTCAGAGGTGCAGTGTTTGAGGTTTGAAAAGATCAAGCAAGAGGTTACTTCATTACATTGCATGTCAGGAGGCTGTGAGGACACCAACACTGCCCCCTACAGCACCTTCATAGTATTGCTTCATGAACATCAGTTCTAGCTGTATGGCTCAATATCAACTGTAAACTAATGAGAATAGTAGAAGGAAGCCAGTTAACTGACTGTCCACGGTCCAGGTTATGCAGGGCTAGGAGATCTGTAGTAGTGGAAGGGATGAGACTAGTTAAGCTTACTGTAAATGTCAGAGTATTTTAACTTGCTAAAAAATGTTATTCTGTAGTAACTTCGCCTCCAAATCACAGAAATAATAAAGTACTAGATTGTAATGCATCATAAGAGGTTGTTGTAAAGAGGTCTCGAGCAATTTGACACACATTTAAGCATTTATCAACTCTAGGCACATTTCAATCTTCAGTGTCAAGAGCCCATCTAAACAAGGATTATTAAAAAGTGTCTACGCAAGACGAACGGTCAATGCAACAAAAATGGTTCCATGAAATAAGATTCATAAGCTATCCTTCAATATGCTCCAAATACCTCAACTGTCTGAATTACTTGCTGTCTGACAAGGAGATATATTTATAGACCACAAGGTGACATAAGTGTCAAATCACCCAAGTGTGGAATTTCAAACACTAGTAATATCTATGAAATGCTATAATTTCTCACTTGTCTCATAAAAAAGGAAATGAATAGCAATGTGTGTGTAAATGCCTAATGTACTGTATGCACCTAACATATCACACTCTTCTTCCTTTATGAAAGAAAGTCCGGCCAAAAGGTTAAGACCATGCTAACATCTAGAGATATCCCCTTAGTTTGGAGATTCAATGTCAACACTGGTATCTAATCACATCAAATGTATAGCTCCATAGAGAAAAACATTCAAACTGTTATGATGCACATTTTTCAGCTTGTTCACCTGTTACAAATCCATTGCTTCTAGAGAATACTTTTTTCCGGTGTAGGTTAACTGGCAGGTAATGCAGGGTAATAGACCGTCACAAGCCAAGTCATAGTGGTAGTAGACAACTCCTGGTAGTTAAAGACCCCTGCAGGTGTAGTAGACAGTGGCGATCCATGTCCCATTCTGGGCTTGACCCCACTGTTTGAGTGGGCATATTAAAAGACCAACTTAACCTTGTTGCACACTAGGAAAGTCAATTTGGGCCACAGCTTGTGTGTGTGGTAACATATTACATATAGACGCACAGGTACAAATGcactcaatacacacacacacaaacacagcggCAGCATAGCAATGCAGCAGGGTATAGCTCAGTTCTCGTCCTCCCGTAGTTCACTGGGTAAGAACTTGTACTGTTGCTGTCTGATCTGAGCCAGCTTCTTCCTGGcctcctccagctctctctccttcctcagcaTCTCCTCCTGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2319674 lncRNA downstream 148353 38507090 ~ 38507341 (-) True G2028198
TU2319671 lncRNA downstream 150838 38504569 ~ 38504856 (-) True G2028195
TU2319646 lncRNA downstream 221271 38431282 ~ 38434423 (-) True G2028172
TU2319611 lncRNA downstream 232112 38411132 ~ 38423582 (-) False LOC110506757
TU2319610 lncRNA downstream 248643 38405183 ~ 38407051 (-) True G2028140
TU2319792 lncRNA upstream 8749 38667503 ~ 38670585 (-) True G2028308
TU2319743 lncRNA upstream 19313 38678067 ~ 38679688 (-) True G2028262
TU2319816 lncRNA upstream 42694 38701448 ~ 38705781 (-) True G2028320
TU2319858 lncRNA upstream 112267 38771021 ~ 38771706 (-) True G2028350
TU2319864 lncRNA upstream 118385 38777139 ~ 38854931 (-) True G2028354
XM_036964592.1 mRNA downstream 151538 38411123 ~ 38504156 (-) False LOC110506757
XM_036964593.1 mRNA downstream 151538 38411123 ~ 38504156 (-) False LOC110506757
XM_036964594.1 mRNA downstream 158460 38411123 ~ 38497234 (-) False LOC110506757
XM_036963303.1 mRNA downstream 281934 38335951 ~ 38373760 (-) False LOC110506753
XR_005039656.1 mRNA downstream 307194 38335951 ~ 38348500 (-) False LOC110506753
LOC110526638 mRNA upstream 143585 38802339 ~ 38819334 (-) True LOC110526638
XM_021586622.2 mRNA upstream 376190 39034944 ~ 39042496 (-) True LOC110506764
XR_002471030.2 mRNA upstream 394319 39053073 ~ 39054291 (-) True LOC110506767
XM_021586623.2 mRNA upstream 401546 39060300 ~ 39068583 (-) True LOC110506765
XM_021586604.2 mRNA upstream 425581 39084335 ~ 39102414 (-) False LOC110506758
TU2319612 other downstream 151559 38480602 ~ 38504135 (-) True LOC110506757
TU2319582 other downstream 307338 38337853 ~ 38348356 (-) True LOC110506753
TU2318287 other downstream 1164278 37490852 ~ 37491416 (-) True G2027052
TU2318224 other downstream 1234657 37420411 ~ 37421037 (-) True G2026993
TU2317556 other downstream 1779698 36834733 ~ 36875996 (-) True LOC110506740
TU2320352 other upstream 567609 39226363 ~ 39227059 (-) True G2028777
TU2320355 other upstream 570375 39229129 ~ 39230810 (-) False G2028779
TU2320356 other upstream 570375 39229129 ~ 39230514 (-) False G2028779
TU2321319 other upstream 1540062 40198816 ~ 40200815 (-) True pldn
TU2321323 other upstream 1608495 40267249 ~ 40269775 (-) True LOC110506132

Expression Profile