RNA id: TU2319816


Basic Information

Item Value
RNA id TU2319816
length 419
lncRNA type intronic
GC content 0.58
exon number 5
gene id G2028320
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 38701448 ~ 38705781 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtgaggcactccactgggctgtactgtgaggtgcttcactgtgctgtactgtgaggcgctccactgtgctgcTCTGTGAGGTGCttcactgtgctgtactgtgaggcgctccactgtgctgtactgtgaggcgctccactgtgctgtactgtgaggcactccactgggctgtactgtgagGCGCTCCACTGGACTGTACTGTGAGGCACTCCACTGGGCTGTACTGTGAGGCGCTCCACTGGGCTGTACTGTGAGgcGCTCCACTGGGCTGCGCCTTCAGGTTGTGTAATTATGAGACTTCACAGGGCTGTGGGGTCTGGGTTTAGAAGGTCAGACAGTGCTCCAGTTGTACTCTAGCTCagtcatcctcctcatcctccccttcctcctcctcatctcatccTCCCCCTCCTGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2319780 lncRNA downstream 6127 38655694 ~ 38695321 (-) True G2028297
TU2319743 lncRNA downstream 21760 38678067 ~ 38679688 (-) True G2028262
TU2319792 lncRNA downstream 30863 38667503 ~ 38670585 (-) True G2028308
TU2319779 lncRNA downstream 42694 38655694 ~ 38658754 (-) False G2028297
TU2319674 lncRNA downstream 194107 38507090 ~ 38507341 (-) True G2028198
TU2319858 lncRNA upstream 65240 38771021 ~ 38771706 (-) True G2028350
TU2319864 lncRNA upstream 71358 38777139 ~ 38854931 (-) True G2028354
TU2319870 lncRNA upstream 83534 38789315 ~ 38791582 (-) True G2028360
TU2319889 lncRNA upstream 120357 38826138 ~ 38827636 (-) True G2028376
TU2319918 lncRNA upstream 169452 38875233 ~ 38875473 (-) True G2028405
XM_036964592.1 mRNA downstream 197292 38411123 ~ 38504156 (-) False LOC110506757
XM_036964593.1 mRNA downstream 197292 38411123 ~ 38504156 (-) False LOC110506757
XM_036964594.1 mRNA downstream 204214 38411123 ~ 38497234 (-) False LOC110506757
XM_036963303.1 mRNA downstream 327688 38335951 ~ 38373760 (-) False LOC110506753
XR_005039656.1 mRNA downstream 352948 38335951 ~ 38348500 (-) False LOC110506753
LOC110526638 mRNA upstream 96558 38802339 ~ 38819334 (-) True LOC110526638
XM_021586622.2 mRNA upstream 329163 39034944 ~ 39042496 (-) True LOC110506764
XR_002471030.2 mRNA upstream 347292 39053073 ~ 39054291 (-) True LOC110506767
XM_021586623.2 mRNA upstream 354519 39060300 ~ 39068583 (-) True LOC110506765
XM_021586604.2 mRNA upstream 378554 39084335 ~ 39102414 (-) False LOC110506758
TU2319612 other downstream 197313 38480602 ~ 38504135 (-) True LOC110506757
TU2319582 other downstream 353092 38337853 ~ 38348356 (-) True LOC110506753
TU2318287 other downstream 1210032 37490852 ~ 37491416 (-) True G2027052
TU2318224 other downstream 1280411 37420411 ~ 37421037 (-) True G2026993
TU2317556 other downstream 1825452 36834733 ~ 36875996 (-) True LOC110506740
TU2320352 other upstream 520582 39226363 ~ 39227059 (-) True G2028777
TU2320355 other upstream 523348 39229129 ~ 39230810 (-) False G2028779
TU2320356 other upstream 523348 39229129 ~ 39230514 (-) False G2028779
TU2321319 other upstream 1493035 40198816 ~ 40200815 (-) True pldn
TU2321323 other upstream 1561468 40267249 ~ 40269775 (-) True LOC110506132

Expression Profile