Gene
RNA
| Item | Value |
|---|---|
| gene id | G2028354 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048590.1 |
| NCBI id | CM023244.2 |
| chromosome length | 51113553 |
| location | 38777139 ~ 38854931 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Retrovirus-related Pol polyprotein LINE-1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2319864 | True | 212 | lncRNA | 0.46 | 2 | 38777139 | 38854931 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110506757 | LOC106562446 | coding | downstream | 272983 | 38411123 ~ 38504156 (-) |
| LOC110506753 | LOC106587607 | coding | downstream | 403379 | 38334242 ~ 38373760 (-) |
| LOC110506754 | LOC106587610 | coding | downstream | 443868 | 38300633 ~ 38333271 (-) |
| LOC110506750 | LOC106562417 | coding | downstream | 554486 | 38126089 ~ 38222653 (-) |
| LOC110506749 | NA | coding | downstream | 718117 | 38056139 ~ 38059022 (-) |
| LOC110506764 | LOC106587718 | coding | upstream | 180013 | 39034944 ~ 39042496 (-) |
| LOC110506767 | NA | coding | upstream | 198142 | 39053073 ~ 39054291 (-) |
| LOC110506765 | sc11a | coding | upstream | 205369 | 39060300 ~ 39068583 (-) |
| LOC110506758 | LOC106587719 | coding | upstream | 229404 | 39084335 ~ 39102425 (-) |
| LOC110506770 | NA | coding | upstream | 365716 | 39182572 ~ 39224554 (-) |
| G2028350 | NA | non-coding | downstream | 5433 | 38771021 ~ 38771706 (-) |
| G2028320 | NA | non-coding | downstream | 71358 | 38701448 ~ 38705781 (-) |
| G2028297 | NA | non-coding | downstream | 81818 | 38655694 ~ 38695321 (-) |
| G2028262 | NA | non-coding | downstream | 97451 | 38678067 ~ 38679688 (-) |
| G2028308 | NA | non-coding | downstream | 106554 | 38667503 ~ 38670585 (-) |
| G2028405 | LOC107662719 | non-coding | upstream | 20302 | 38875233 ~ 38875473 (-) |
| G2028446 | NA | non-coding | upstream | 68563 | 38923494 ~ 38924064 (-) |
| G2028458 | NA | non-coding | upstream | 77942 | 38932873 ~ 38934552 (-) |
| G2028457 | NA | non-coding | upstream | 80072 | 38935003 ~ 38936810 (-) |
| G2028500 | NA | non-coding | upstream | 154890 | 39009821 ~ 39010201 (-) |
| G2027052 | NA | other | downstream | 1285723 | 37490852 ~ 37491416 (-) |
| G2026993 | NA | other | downstream | 1356102 | 37420411 ~ 37421037 (-) |
| LOC110506740 | LOC106562403 | other | downstream | 1901036 | 36793286 ~ 36913660 (-) |
| G2028777 | LOC106587714 | other | upstream | 371432 | 39226363 ~ 39227059 (-) |
| G2028779 | NA | other | upstream | 374198 | 39229129 ~ 39233948 (-) |
| pldn | pldn | other | upstream | 1343885 | 40197134 ~ 40200916 (-) |
| LOC110506132 | LOC106562499 | other | upstream | 1412318 | 40213044 ~ 40269852 (-) |
| G2029844 | NA | other | upstream | 1652815 | 40507746 ~ 40508282 (-) |
