RNA id: XM_036963304.1


Basic Information

Item Value
RNA id XM_036963304.1
length 3161
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC110506754
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 38300633 ~ 38333271 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaatcgTTTTTATTTCTAGGTCTAGGTTTAGGCTAATCTAtatctgggaaactggcccataGTGTTCTTAGTTAGATTGGACAGTAGATGGCAGTAATCCCATCTCTATGACCACACTGCGTAATGTACTCGATCTATTCTATACGTTACAGTACAATTTATTTCAGTTACTCACGTAGCCTACATCTGGGCGGAGGGAGCTAGAACATTCGCATTATTGAATTGTGATGTTCGGATTTATGCATCATtcgttgtaaaaaaaaaaaccgaCCAGCTGATCGAACAACTTGCACAaATATGATATCGCGGATACTCCATAGAGGTGATTTTCTAAACCTGGGGACGAACTTGATGCTGTGTTTTCTCTGTGGGATGACATCGGGAGATCCTACAACAGGAAGTGCATTTGGCTTGATGACAAAATATTCTTTGATTGATGGacaTAATGACCTAGCTTTGATGCTGAGGATTCTCCACGGCAACAGACTGAGTCAGGTTGACCTGCACAACATCAGCAAAGTGGCCACGGACATCAACAGACTCACAACGGGACACGTCGGCGCTCAGGTGTTTGCAGCCTACGTGTTGTGTGGCGCCCAGGCGAAGGATGCTGTGAGGCTCACACTGGAACAGATAGACGTGATCAACCGTATGTGTACGGAGAACCCAGAACTGGAGCTAGTTACATCTGCCAAAGAACTAAATGACACTAACAGGATAGCATGTCTGATCAGCATTGAGGGAGGACATTCAATAGACAGCAGCCTGCCAACCCTGCGTATGTTTTACCAGCTGGGGGTTCGCTCCATGGCCCTCACACACACCTGCAATACACCTTGGGCTGAGTCCTCCTCAACAATTTATGATGTCTATCAAAGAGAAAATGACAGCCTAACAGACTTCGGTAAGgaTGTGGTGAAGGAGATGAACAGATTGGGGATGATAGTAGACCTGTCCCATAGTTCCTGGGCCACAGCCAGGGCAGTACTGCAGATCTCTAAGGCTCCAGTTATTTTCAGCCACTCCTCAGCCCATGCCGTGTGTAACCACAGCCGCAATGTTCCCGATGACCTGCTCCGCGAACTGAAGGAGAACGGAGGACTCATCATGGTTAATCTGCACAGTGGGTTTGTGGCTTGCCATGGCCAAGCCAATATCTCCATTGTGGCTGACCATTTTACCCACATTAGGAAGGTGGTTGGATCTGAGTCAATAGGAATAGGAGGGGACTTTGATGGAGCTTCTAAGTTTCCTCTTGGATTAGAGGATGTGTCCAAGTATCCCGCTCTGATCCAGGAGCTGCTGaagagacactggacagagaacgAGTTGTCCGGGGTCCTCAGACACAACTTCCTACGTGTGTTCAAGGAGGTCGAGAAAgagCGTGACAGGCAGAAAGCGAAAGGAACTCTCCCCAGTGAAGCTCAGATCGACTTGACTGGGGTTCAGAACCCCTGCAGACTGGTACTCAGGCGACCTTACCACCAGACGACAAAGATGGAACAGATGTACTCCAAGGGCCACAGTGAACTGGTGGTCCCCAGGAGTCTGGTCTGGACCATGGTTATACTAATCTCCTGCCTCTGTGTCCTGATGGACCATTAAGACTATAATATGGCCTGGATTCAATCAGATCCAGCGGTAACCCAGGTTGACCGATATCCTGATAGCGGATGTTTTGGCAGTATTGGAGGTGTAGCTGCAGTGTGAACTGACAAATAAGTGTGTGGCTGCTCTTTTGTGTCACCAACCACTCCCTTCCTTATTATCCCTACACATTAGATGTTCAAAACGACAATAGAAAGTGCAGGCTCTATCGACAATAGATATTATGAAATGCATGTTTTCATTTTAATTTGGATGGCGGGATTTATTAGTCTATGTAGACAATAGACCATTACGCATTAGAGTGTTTGAACTTGTAATGTGGCTACATGAACTAACGTGGCTGCATGGGATTTGTTGGATATAAAGTCGGTGTGGTTTCATTGCATCCAATGACAGTGTCCACGATAATGTAACATAAGGAGcagctctaacgcagttccacTTTCAACACTGCCAAAACAACCGGATGTCGACTAGCACGGATCTGAATTTAGCCCTTAGTGTTACTAAACTAGCAGTGCTTGACTTGCGCAGGAGCCCACTggagctgagtaccggcacctcaagTTCACTACTGCTTGAGCTTGTTTTACTCTTATAGAATATTTGCTCAAAAGTAtagtggagctcctgcacctaaatataaacagtacttgcacccaaaatgagtaccggaaccTATTTAGTAGTACTACTAGTGTTGTATTACAATACACTATCCACTACAAACATGTTTCTCCGACAGTAAAAAGCCTAGCTTGAACGTGTTTACTGTGTCACTTGCTTACATGTGATCTTCCCTACAAATAACTTTAcctaatttttttgttgttggtcatTTTGACCTTGAATGAGTTGTATTATTTACACAATGCTCTGCACACACTTGATACTATATTACATTGAGTTTGATGTAACAACTCTTTTTACATATCTCATTCTAAAAATATATTTCTGTTATGTTTGTTTAATGATACAATCAAGGCCACAAGGTCATACTGAGGAATTTACAAACTATCTTTATTTCTCTGAGGACACGGACCTTGATGTCCATCAGACAAACTTGAGTTTCACAATGAAACTGTTTCATAGAAAGACGAGTTCATCTTAAAATGAACATTAATGTAACATTTCCTCACAAGGGTGTACAGTGAAACAGTATGTAacatgttaatatactgtaatgCCTCCTACAGTCATCTCAGGAATGTTGTATTCTGTATTCATAGGTTATATCGTATTTATTTAGCCTTTCTCTTAAGTAAATAATGCTTTGAGTTTTCTGTTTTTCTACCATCTTATTTTATGAACACATTGATATATCTGAAGTCAAGATAGTTCAATTCTGGTTGAATAGGGAAATGAATCATGATTTTATTGGTAAATTCAGATAAATACTCTTCGTCTTTACAGCTCTTGCAGTCTACAGGAAAGAAAAGGAAATGTGTGCATATGCTACTCTGTTCAGGTGGCCCTGTAAGTCGTCTTCATGCCTATAATAATCTATTTTGTACAGAAATAGCAGATTAAATGTAATGTATAATTGTCAA

Function

GO: NA

KEGG:

id description
K01273 DPEP; membrane dipeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2319565 lncRNA downstream 6582 38293614 ~ 38294051 (-) True G2028109
TU2319564 lncRNA downstream 7548 38291715 ~ 38293085 (-) True G2028108
TU2319571 lncRNA downstream 8978 38291389 ~ 38291655 (-) True G2028115
TU2319569 lncRNA downstream 13803 38286565 ~ 38286830 (-) True G2028113
TU2319567 lncRNA downstream 14894 38285530 ~ 38285739 (-) True G2028111
TU2319587 lncRNA upstream 971 38334242 ~ 38337256 (-) False LOC110506753
TU2319602 lncRNA upstream 15609 38348880 ~ 38349115 (-) True G2028133
TU2319604 lncRNA upstream 17740 38351011 ~ 38351232 (-) True G2028135
TU2319608 lncRNA upstream 22695 38355966 ~ 38356599 (-) True G2028138
TU2319610 lncRNA upstream 71912 38405183 ~ 38407051 (-) True G2028140
XM_021586593.2 mRNA downstream 77980 38126089 ~ 38222653 (-) False LOC110506750
XR_002471028.2 mRNA downstream 241611 38056139 ~ 38059022 (-) True LOC110506749
XR_005039854.1 mRNA downstream 499897 37799397 ~ 37800736 (-) False LOC118944515
XR_005039855.1 mRNA downstream 499928 37799397 ~ 37800705 (-) False LOC118944515
XM_021586599.2 mRNA upstream 2680 38335951 ~ 38348233 (-) False LOC110506753
XM_021586598.2 mRNA upstream 2680 38335951 ~ 38348500 (-) False LOC110506753
XR_005039655.1 mRNA upstream 2680 38335951 ~ 38348500 (-) False LOC110506753
XR_005039656.1 mRNA upstream 2680 38335951 ~ 38348500 (-) False LOC110506753
XM_036963303.1 mRNA upstream 2680 38335951 ~ 38373760 (-) False LOC110506753
TU2318287 other downstream 809217 37490852 ~ 37491416 (-) True G2027052
TU2318224 other downstream 879596 37420411 ~ 37421037 (-) True G2026993
TU2317552 other downstream 1424530 36834733 ~ 36876103 (-) False LOC110506740
TU2317556 other downstream 1424637 36834733 ~ 36875996 (-) True LOC110506740
TU2316868 other downstream 1957199 36343156 ~ 36343434 (-) True G2025757
TU2319582 other upstream 4582 38337853 ~ 38348356 (-) True LOC110506753
TU2319612 other upstream 147331 38480602 ~ 38504135 (-) True LOC110506757
TU2320352 other upstream 893092 39226363 ~ 39227059 (-) True G2028777
TU2320355 other upstream 895858 39229129 ~ 39230810 (-) False G2028779
TU2320356 other upstream 895858 39229129 ~ 39230514 (-) False G2028779

Expression Profile