RNA id: TU2319567



Basic Information


Item Value
RNA id TU2319567
length 210
lncRNA type intronic
GC content 0.40
exon number 1
gene id G2028111
representative True

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 38285530 ~ 38285739 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGTGAACCTCTCCGGTCGTGATTATAAAGATTGATTCCTTTACACTGAGTTTCAGTGGTGAATTTCCACAACAGGTGCTATTCTTGTTCAGCTACTGAAGATTATTACAGTGAAGTTCCTTCTTTCTAGGTTACCATCAGAACACCAGAGAACAAAATGCCTCTATAGCTGGAGTCTGCATAAAGTCCTCCAGTCAGTCAACAGGATAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2319557 lncRNA downstream 20663 38264590 ~ 38264867 (-) True G2028101
TU2319553 lncRNA downstream 24552 38260684 ~ 38260978 (-) True G2028097
TU2319546 lncRNA downstream 52609 38232647 ~ 38232921 (-) True G2028090
TU2319544 lncRNA downstream 58341 38226799 ~ 38227189 (-) True G2028088
TU2319539 lncRNA downstream 65728 38218896 ~ 38219802 (-) True G2028084
TU2319569 lncRNA upstream 826 38286565 ~ 38286830 (-) True G2028113
TU2319571 lncRNA upstream 5650 38291389 ~ 38291655 (-) True G2028115
TU2319564 lncRNA upstream 5976 38291715 ~ 38293085 (-) True G2028108
TU2319565 lncRNA upstream 7875 38293614 ~ 38294051 (-) True G2028109
TU2319587 lncRNA upstream 48503 38334242 ~ 38337256 (-) False LOC110506753
XM_021586593.2 mRNA downstream 62877 38126089 ~ 38222653 (-) False LOC110506750
XR_002471028.2 mRNA downstream 226508 38056139 ~ 38059022 (-) True LOC110506749
XR_005039854.1 mRNA downstream 484794 37799397 ~ 37800736 (-) False LOC118944515
XR_005039855.1 mRNA downstream 484825 37799397 ~ 37800705 (-) False LOC118944515
XM_021586600.2 mRNA upstream 14894 38300633 ~ 38321565 (-) False LOC110506754
XM_036963304.1 mRNA upstream 14894 38300633 ~ 38333271 (-) True LOC110506754
XM_021586599.2 mRNA upstream 50212 38335951 ~ 38348233 (-) False LOC110506753
XM_021586598.2 mRNA upstream 50212 38335951 ~ 38348500 (-) False LOC110506753
XR_005039655.1 mRNA upstream 50212 38335951 ~ 38348500 (-) False LOC110506753
TU2318287 other downstream 794114 37490852 ~ 37491416 (-) True G2027052
TU2318224 other downstream 864493 37420411 ~ 37421037 (-) True G2026993
TU2317552 other downstream 1409427 36834733 ~ 36876103 (-) False LOC110506740
TU2317556 other downstream 1409534 36834733 ~ 36875996 (-) True LOC110506740
TU2316868 other downstream 1942096 36343156 ~ 36343434 (-) True G2025757
TU2319582 other upstream 52114 38337853 ~ 38348356 (-) True LOC110506753
TU2319612 other upstream 194863 38480602 ~ 38504135 (-) True LOC110506757
TU2320352 other upstream 940624 39226363 ~ 39227059 (-) True G2028777
TU2320355 other upstream 943390 39229129 ~ 39230810 (-) False G2028779
TU2320356 other upstream 943390 39229129 ~ 39230514 (-) False G2028779

Expression Profile