RNA id: XM_036964133.1


Basic Information

Item Value
RNA id XM_036964133.1
length 2667
RNA type mRNA
GC content 0.57
exon number 11
gene id LOC110506132
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 40213044 ~ 40269852 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAAGAGGAGAAACATCACAAACCCAAGAGCAACAGCCACAATGAGGAGAACAATGACAGCTTCGAGTCTTCAGGGAAGAGCCATCACAAGACACTTCCCTCCCTGATGACACAGGTCCTGCAGCAGACTGGTCCACTCAAATAGAGGCTCATGATGACGATCCACCAAACCTTGCCAGTACTCCGGCCACCTCCCACCTCCCTAGTGGCTACCCTCCTCTGCCCCCAGACACTTCCAGCTCCAATGAAGGTACCCATCCATCAAAAAGTGACAAGCCTGTGTCTTCTCTCCAGCTGTGACTGCGATGGAGGAGGTGTCTCTGAGAGTGCTGCCAATGGACCCAGCAGACCGGGGAACCCAGAGGGTCAGACTGGGCCCAGGGCTGATGTCCTccctggggttggggctgggctCTCCTGTTCTGGTGGCTCTGTCTGGAGGGTCCTGTCTCTGTACTGCCTGGCCCAGGCCTGACCTGGCTGACGGATTCATACAGATAGACATGAAATGTTGTTCTTCAAATCTTATCTTAAACAAAGCTACACCCACACACCTCAGCCTACCCCTAAcccccagccctaaccctagccccagcTCTAGCCCACTTCCCCCCAGCCCATGCCTAAGTCCTAGTCTCACCCCAGTCTCCTGCCCCAAGCTGAAAGGCATCCGAATAACAGTGGTGGTTCACAGTGTGGAGTTCCGGAAAACCACCCCTCCCAGTTTCATCCATGAACTAGTGAAGGACATGCTGAAAGGGACATATGTCCACCAGAAGCACGTGATAGATGTGAGTGACTATGACACGGACATTAAACTGATCGTCATTGAGAGCCTGAACCCAGAGTCCACCGTGACTGGTTTGGTTACATCTAAGACAGGGGTGGAAATAACGGGGACGAGGACCCTCCGGTATTACAGAGGACAGCTCCAGGAGCAGCCCAAGGTCCTGCTGGGAGGACTGGAAGAGGTGTCAGCGTCTCTGAGAGAGATGTTGCACCTGCCTCTGCAGTACCCTGCTACCctgggctccctgggtctctcctGCCCCAGAGGAGTGCTCCTTGCTGGGCCGCCGGGGGTCGGAAAGACCCTGCTGGTCCGCTGCCTGGTGGGGGAGGTGGGGGCCAGCCTGATCACAGTCAGAGGACCAGAGGTAGTGGGGTCTCGGCCAGGGGAAAGTGAGGAGAGGTTGCGGGCGGTGTTTGGTCGGGCGCGGGCAGCGGCAGAGGAAGGGCCTTGTGTGTTGTTCCTGGATGAGCTGGACTCTCTCTGTCCCAGACGGATTGGATCCTCCGCACCCGAGAACCGGCTGGTCGCTCAACTGCTCACGCTCATGGACGGCATGGACCAATCAGATCGCTTCCTCATCGTAGGAGCCACTAATCAGCCGGACAGCTTGGACCCGGCGCTACGGAGGCCCGGGAGGTTCGACAGAGAGgtggttatcggtgcccccacagcacagcagcggTTGTCCATCCTGTCAGTGCTGTGCCAGGCCAtgccagtgtgtgtcagtgtggacTGGGCAGAGCTGGCCCAGAGGACTACAGGATATGTGGGTGCTGACCTCAGTGCTCTCTGCCGTGAGGCTGCCATGCTGGCTATACGACACAACACACCGGGTTCAGGGGAGCAGGCTATCACCATGGAACACTTCCTGTCTGCCCTGAAGACTGTCCGTCCATCCTGTCTGAGAGGCAGTCTGGGACGGACAGACCTCCCAGCCGTCTCCTGGGAACAGATAGGAGGCCTGGAGGAAGTCAAAGTCAAACTACAACAGAGTATAGAGTGGCCAATGCGTTACCCGGAGGCGTTTGTGCGTCTGGGTCTGTCCCGTCCCCGGGGGGTGTTGCTGTACGGTCCCCCAGGCTGTGCTAAGACCACCCTGGTCAGGGCTGCAGCTACCTCCTCCCATTGCTCCTTCCTGTCAGTCAGCGGGGCTGACCTCTACTCTCCATTTGTAGGAGATTCGGAGAAGGCCCTGGCTCAGCTCTTTCGTCAGGCGCGGGCCTGCGCTCCCTCCATCCTGTTCCTGGATGAGGTGGACTCTCTGATTGGCTCCCGGTCAGAAGGCTATGTCCCTCAGAGTGCCCAGACCCGCCTCCTGTCTGTGCTGCTGAATGAGCTGGACGGGGTAGGCTTTAGGACCCTGGAGAGGCGAGGAGCAGGGAAGACCCTACAGGCTGAGGGAGTGGAGCACCACCAGCAACAGGAACATTTGGAGTACCAGGAGGTGTGTAACAAGGAAGTGATGATCGTAGCGGCCACTAACAGACCAGACTCTCTGGACAGTGCCCTCCTAAGGCCTGGAAGACTGGACCAGATCATCTATGTACCcccacctgacctacagGCGCGTGTGTCCATCCTGCAGGTGTGTACAGAGAAGATGCCCCTGGATGATGATGTGTGTCTGGAGGAGCTGGCTAGACACACTGACCTTTACTCTGGAGCAGACCTGGAGAACCTGTGCAGAGAGGCAGCTCTGTTGACGCTCCAGGATGAAAGTATGGAAGCTTCTAGTATCAAACACCGATACTTCCTCCAGTCTTTACAGAGGATGACTCCCTCTCTTTCGACCCACCAACTACAGACATACAAAAACCTCTTCAGATGACCAACTATAGACCCACCCCATCAGATGATGCCTCGGACTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2321318 lncRNA downstream 14946 40197134 ~ 40198466 (-) False pldn
TU2321345 lncRNA downstream 25074 40188081 ~ 40188338 (-) True G2029583
TU2321343 lncRNA downstream 33616 40179207 ~ 40179796 (-) True G2029582
TU2321342 lncRNA downstream 36140 40176674 ~ 40177272 (-) True G2029581
TU2321341 lncRNA downstream 37395 40174367 ~ 40176017 (-) True G2029580
TU2321390 lncRNA upstream 21507 40290170 ~ 40292339 (-) True G2029615
TU2321391 lncRNA upstream 25644 40294307 ~ 40294654 (-) True G2029616
TU2321393 lncRNA upstream 28755 40297418 ~ 40297617 (-) True G2029618
TU2321394 lncRNA upstream 32765 40301428 ~ 40301641 (-) True G2029619
TU2321392 lncRNA upstream 34241 40302904 ~ 40307902 (-) True LOC110506134
XM_021585492.2 mRNA downstream 12496 40197134 ~ 40200916 (-) False pldn
XM_021585493.2 mRNA downstream 12592 40197134 ~ 40200820 (-) False pldn
NM_001160589.2 mRNA downstream 12683 40197140 ~ 40200729 (-) False pldn
XM_036963148.1 mRNA downstream 13385 40197134 ~ 40200027 (-) False pldn
XM_036963147.1 mRNA downstream 13393 40197134 ~ 40200019 (-) False pldn
XM_036963648.1 mRNA upstream 27461 40296124 ~ 40307911 (-) False LOC110506134
XM_036963649.1 mRNA upstream 27461 40296124 ~ 40307911 (-) False LOC110506134
XM_036963650.1 mRNA upstream 66881 40335544 ~ 40365947 (-) True LOC110519217
XM_036963536.1 mRNA upstream 394855 40663518 ~ 40666752 (-) False dut
XM_036963537.1 mRNA upstream 394855 40663518 ~ 40667842 (-) True dut
TU2321319 other downstream 12597 40198816 ~ 40200815 (-) True pldn
TU2320355 other downstream 982602 39229129 ~ 39230810 (-) False G2028779
TU2320356 other downstream 982898 39229129 ~ 39230514 (-) False G2028779
TU2320352 other downstream 986353 39226363 ~ 39227059 (-) True G2028777
TU2319612 other downstream 1709277 38480602 ~ 38504135 (-) True LOC110506757
TU2321668 other upstream 239083 40507746 ~ 40508282 (-) True G2029844
TU2321690 other upstream 282516 40551179 ~ 40567512 (-) False G2029858
TU2321988 other upstream 507051 40775714 ~ 40778988 (-) True G2030106
TU2322044 other upstream 618940 40887603 ~ 40888684 (-) True G2030157
TU2322050 other upstream 629807 40898470 ~ 40899021 (-) True G2030162

Expression Profile