RNA id: XM_036963148.1



Basic Information


Item Value
RNA id XM_036963148.1
length 1147
RNA type mRNA
GC content 0.45
exon number 6
gene id pldn
representative False

Chromosome Information


Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 40197134 ~ 40200916 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGTTATACTCCTCAgaaggatgagctggccaatcagtggtcTAGAAGAGGATGAGCTGGACAATCAGCAGTCCACTTGCATTAATATTTTTAATAACCagtatacgcccacaccattccaacacagaaaagctttGTTGACATACTTAATTACCattttttggaaggaaaactatttcactgaTATTGCTGTAGAATCAGACAGTGACGAACAAcatggagacagaggggagggcaGATGAGAGTTCCTCGTCTCAGCGTGACCCTCCTCAGAACACTGGCAGCTACGAGGACTCCCAGCCTGCAGAGAAATCAGTCCCTATTGAAGAGGCCATTGTAGTGGACAGAAAGGCCATAGAGAAACTGACAGAAGGCCTGCTCTCTCACTACCTGCCTGACCTCTACAGCTCCAAACAAGCTCTGTTGGAACTCAATCAAAACCAAGTCATCCTGCTGGACACACTGGACCAAGAAGTCACCAAATTCAGAGAGTGCAACTCCCTACTGGATCTAAACTCACTGTTCACAGAGGCCAAGTTTTATCACGGTAAACTGGTGAACATACGTAAAGACATGATCATGCTGCACGAGAAGACAACTAAACTAAAGaaaAGAGCGTTGAAGCTGCAGCAGCAGAGACAGAAGGAGGTGATGGAgaaagaacaacagagagagaaggagctggagagagagaggcagctgaTTGCCAAACCTGCCCAGAGAACATAGAACCATCCATGAACTCTGTCCTAACTCTGTCACTGCCAACTATACTATAGAGCCAATGACGAGGGATGCAGCACACATGTCGAGGGCTCCGGTCCTGACCCCATCTCTGGTTGTGGAACAGTAGACCAACTCTATTCCTCAAGATGACACAGTTCATCCATGGTTGTTGTCAGAAAGTCAGACATGATTTGGTCTCTTGTATGTAGAGGTGTTAGGACAAGTACTGCTTGTAGGTAGTTTTATATTCAGAGGTGTCAAGACGATTACTGCTCCTTGTTAGTTTTTGTGGCCAATCATGCTGTTTAGATCAGAAACAGCACACGCCAGCAGTGATTATTCCTCACTTCCTCCTAAATGGCTGTAATAATAGAGATGTCTGAGGTGAATAAAAGAGAAGAGCAGATGAAGTCAATCAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2321345 lncRNA downstream 8796 40188081 ~ 40188338 (-) True G2029583
TU2321343 lncRNA downstream 17338 40179207 ~ 40179796 (-) True G2029582
TU2321342 lncRNA downstream 19862 40176674 ~ 40177272 (-) True G2029581
TU2321341 lncRNA downstream 21117 40174367 ~ 40176017 (-) True G2029580
TU2321316 lncRNA downstream 27857 40167663 ~ 40169277 (-) True G2029558
TU2321324 lncRNA upstream 13017 40213044 ~ 40213924 (-) False LOC110506132
TU2321354 lncRNA upstream 15410 40215437 ~ 40215835 (-) True G2029588
TU2321355 lncRNA upstream 15825 40215852 ~ 40216147 (-) True G2029589
TU2321356 lncRNA upstream 18086 40218113 ~ 40218364 (-) True G2029590
TU2321357 lncRNA upstream 21050 40221077 ~ 40221307 (-) True G2029591
XM_036963266.1 mRNA downstream 46358 40138871 ~ 40150776 (-) False LOC110526651
XM_036963267.1 mRNA downstream 46358 40138871 ~ 40150776 (-) False LOC110526651
XM_036963268.1 mRNA downstream 46358 40138875 ~ 40150776 (-) False LOC110526651
XM_036963269.1 mRNA downstream 46358 40138899 ~ 40150776 (-) True LOC110526651
XM_036963265.1 mRNA downstream 46359 40138871 ~ 40150775 (-) False LOC110526651
XM_036964133.1 mRNA upstream 13385 40213412 ~ 40268663 (-) False LOC110506132
XM_036964132.1 mRNA upstream 13385 40213412 ~ 40269852 (-) False LOC110506132
XM_036963648.1 mRNA upstream 96097 40296124 ~ 40307911 (-) False LOC110506134
XM_036963649.1 mRNA upstream 96097 40296124 ~ 40307911 (-) False LOC110506134
XM_036963650.1 mRNA upstream 135517 40335544 ~ 40365947 (-) True LOC110519217
TU2320355 other downstream 966324 39229129 ~ 39230810 (-) False G2028779
TU2320356 other downstream 966620 39229129 ~ 39230514 (-) False G2028779
TU2320352 other downstream 970075 39226363 ~ 39227059 (-) True G2028777
TU2319612 other downstream 1692999 38480602 ~ 38504135 (-) True LOC110506757
TU2319582 other downstream 1848778 38337853 ~ 38348356 (-) True LOC110506753
TU2321323 other upstream 67222 40267249 ~ 40269775 (-) True LOC110506132
TU2321668 other upstream 307719 40507746 ~ 40508282 (-) True G2029844
TU2321690 other upstream 351152 40551179 ~ 40567512 (-) False G2029858
TU2321988 other upstream 575687 40775714 ~ 40778988 (-) True G2030106
TU2322044 other upstream 687576 40887603 ~ 40888684 (-) True G2030157

Expression Profile