RNA id: TU2321316


Basic Information

Item Value
RNA id TU2321316
length 989
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G2029558
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 40167663 ~ 40172576 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaaacacattctGTCCTCCTCACCCAGAgttgaggagcaggaggagaggaaggaggggagagagacaagagTCCTCACCCGTAGGTGTAAAGCAGGAATCCTTCCACGATGAGGATGTGAGTTCCCTCATCCCTGTGGTCAGACTCCGGGAGAATCTCCGTATCCAAGGTGTTGTTGACGCCGTGCGACCTTTCAAACTTCACCGGGTCGTCAAGCCAGGCGTAGATGGTACTCATCATGGCGTCCATGTCGAGGGCAGTGATGACTGGAGGGATGAAGGAAAGAAAAAGGCatataaagggagagagacagtgagaaatgGACAGATATACAGCTAAAATCCACCTTCTAGGTTAAGGAGCATGATGATTGTATTAAGTAGTAGTGtgttacacacccacacacagacagactcaccccCCCAACCCTTCCAGAAAGAACCCATCTTACCATCATACTGCTTAAAGCCATCTTCACCAACTTCAATCTGATCTTGTGGCTGAAACATACATGAATGAGATGTACCCAGGTACAGTCTAACATTCTGCCATATGAACACCTCAGGGTCTGCCAACCCTCCCTCACGCCTCtctcccaacacacactgaaggaAATACCTGCTCTTCTATCCAAGCAATGACATCCATATAGATTCAAAGCTCTGACGAATCTAGCCCATGTGCAATGTGCGTTTACTCTATCACTAGCATAACGACCAACATAATAACAACAGTAATACACTCATAAGAGACTGCACTTCATCTTGTCAGACAGTGAAAGTTCAGGAAACTTGCAAAAAACGTCAAAAAAACCAGGACCGGTCAGCCCTCTAGGAACTCAGTGATCAGACGGAAGAAAGCTTCAAAAGAGAAGGTTCAGTAAATGTTAACTACTTGATTCTTCCATATTTCAGAATATGGTGAAAGGTTGGACGATGTCACTTCGCTGTGTGCTTCCACCAAGAGAGAAATTAACTGCTAGGCTCACT

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2321340 lncRNA downstream 275 40166662 ~ 40167388 (-) True G2029579
TU2321333 lncRNA downstream 7464 40159829 ~ 40160199 (-) True G2029572
TU2321321 lncRNA downstream 8409 40151643 ~ 40159254 (-) True G2029560
TU2321331 lncRNA downstream 30627 40136822 ~ 40137036 (-) True G2029570
TU2321308 lncRNA downstream 92901 40073900 ~ 40074762 (-) True G2029555
TU2321341 lncRNA upstream 5090 40174367 ~ 40176017 (-) True G2029580
TU2321342 lncRNA upstream 7397 40176674 ~ 40177272 (-) True G2029581
TU2321343 lncRNA upstream 9930 40179207 ~ 40179796 (-) True G2029582
TU2321345 lncRNA upstream 18804 40188081 ~ 40188338 (-) True G2029583
TU2321318 lncRNA upstream 27857 40197134 ~ 40198466 (-) False pldn
XM_036963266.1 mRNA downstream 16887 40138871 ~ 40150776 (-) False LOC110526651
XM_036963267.1 mRNA downstream 16887 40138871 ~ 40150776 (-) False LOC110526651
XM_036963268.1 mRNA downstream 16887 40138875 ~ 40150776 (-) False LOC110526651
XM_036963269.1 mRNA downstream 16887 40138899 ~ 40150776 (-) True LOC110526651
XM_036963265.1 mRNA downstream 16888 40138871 ~ 40150775 (-) False LOC110526651
XM_036963147.1 mRNA upstream 27857 40197134 ~ 40200019 (-) False pldn
XM_036963148.1 mRNA upstream 27857 40197134 ~ 40200027 (-) False pldn
XM_021585493.2 mRNA upstream 27857 40197134 ~ 40200820 (-) False pldn
XM_021585492.2 mRNA upstream 27857 40197134 ~ 40200916 (-) False pldn
NM_001160589.2 mRNA upstream 27863 40197140 ~ 40200729 (-) False pldn
TU2320355 other downstream 936853 39229129 ~ 39230810 (-) False G2028779
TU2320356 other downstream 937149 39229129 ~ 39230514 (-) False G2028779
TU2320352 other downstream 940604 39226363 ~ 39227059 (-) True G2028777
TU2319612 other downstream 1663528 38480602 ~ 38504135 (-) True LOC110506757
TU2319582 other downstream 1819307 38337853 ~ 38348356 (-) True LOC110506753
TU2321319 other upstream 29539 40198816 ~ 40200815 (-) True pldn
TU2321323 other upstream 97972 40267249 ~ 40269775 (-) True LOC110506132
TU2321668 other upstream 338469 40507746 ~ 40508282 (-) True G2029844
TU2321690 other upstream 381902 40551179 ~ 40567512 (-) False G2029858
TU2321988 other upstream 606437 40775714 ~ 40778988 (-) True G2030106

Expression Profile