RNA id: XM_036963269.1


Basic Information

Item Value
RNA id XM_036963269.1
length 2175
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC110526651
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 40138871 ~ 40150776 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCACGAGATCCACCAGCATGAGAAACCGGAAGGGAATGGCTAACTAAAAAACGATGATGCGAGTACAATAAGGGACGATATTGAAACTAATGGTGTGCCAAACCAACGattatagtttttttttcttgTGAATACGATTTTTACTCAATTCCGTATGTTACCGACATGGCAAAAACTCCGTGGATTATTATTTTATCAGTCATTCTCCGGTCATCTCAGGTGATCTGTCAAGAGGCAATCTTGCACATCTCAAATGGAGCCACAGATAAAGAATACTGCCTGGTCTACAACTCCCTATGGACCAACCTGTCACTCTCACTCAGCGCTGCTACTGCGTATCCCCTGGTGAACTTGTCGTCCAGGCTACTGTGTAGCTCTGCAGGGGTGAGCCCAGCCATAGTGAGAGGCAAGGCGGTGGTGGTCATGAGAGGGGGGTGTAACTTCAGCCAGAAGGCTGAGATAGCTCAAGACCTGGGGGCTGCCGCTCTGATCGTTGCCAGCACTAAACCTATGAGTCCCCCGGGAGCCAATGTGACAGAGTATGAGAAGGTCCAGATTCCGCTGGCTCTGATGAGATACATGGACTTCCTGGACGCACAGAATgtGTTTGGTGAGGAGATGCAGGTTAGGCTGTATGCCCCGGCGGTGCCTGTGTTTGATGCCAGCATTGTGGTCATGCTTCTCATAGGAGTGGTGACTGTTGCTCTGGGAGGCTACTGGAGCGGAGCCTGTGAGAGagagaggctgagggcgtctcgaggaggaggaggaagaggaggagaggagaagagtgacaGTGGGGACTTGGCTCTGTACTCTCCCCTAAAGGTGGTCATTTTTGTAGGTCTGATGTGTCTGATGCTGGTACTCATGTACTTCTTCTACAAGTACCTGGtgTATGTGATCATCGCCATATTCTGCTTAGCGTCAGCCACCGCCCTCTTCAGCTGTCTGGACGCCCTGTTGGACCTGGCCAAGTGTAGCCccatgagTGTGACGGTCCTGGGTGGGAGTGTATCTGTGAGGTCGGTGCtgctgtctgctgtgtgtgtcacTGTAGCCGTGGTGTGGGGAGTCTACAGGAACGAGGACAGGTGGATCTGGATCCTGCAGGACCTCCTGGGTGTGGCCTTCTGTCTCAACTTCCTGAAGACCATCTCACTGTCCAACTTCAAGatCTGTGTGATCCTGTTGAGTCTGCTGCTGTTGTATGATGTGTTCTTTGTCTTCATCACTCCTCTGTTCATGCCGAATGGAGAGAGCATCATGGTCCAAGTGGCCCTGGGTCCAGATGCAGCAGGAGAGAAGCTCCCGGTAGTGATGCGTGTTCCACGGTTCTCTGCGTGGACACAGAACCTGTGTGGCATGCAGTTCTCCATCCTGGGCTATGGGGACATCATCGTACCAGGTCTTCTTGTGGCCTATTGCAGCAGGTTTGATGTGTGGGTCAACAGCCCCAAGAAGATCTACCTTTTCTGCTGCTGCATAGcCTATCTGTGTGGTATGGTTTTGACGTTTGCGGTGATGTTGGTGACTAAGATGGGGCAGCCAGCCCTGCTCTACCTGGTTCCATTCACCCTGCTAGGATCTGCACTGTTGgcctggaggagaggggagatgaggcaGTTCTGGAACGGGACCACATATGAGATGGAACACCTGACTCTGGCAGCGGAGGAGGAAAGTGCTGACTGCAGCTGATCTATGAGCCAACTAACAAACCAATCGCAGGGGCTCTTTTCTACTCTTCAAATCAAGCATCTAGTTTATCATCCATGGAATGCAAGGGAAATACTATAGCTAGTCTATCAATCAATAAGGATGTATACTGGGGAggggtaaggggttaggggtATGGGTTGTACAGTGTGGGTCTCTGTTGATTGGACAGTGAGACAGTTTAATTTGAGAGGCTTACTAGTGGCTAAGAATGCAGTGGCTAACTAGGGGCTATAATATTAAATGATGCCTAAACTGTGTTGCCTTGGTAAACGATGCAAGTGATTTATTGAGAAAGCACTTTAATACTCATGTTGGCAGGTATTGGGGGATTTTAAATTCAAAGTTAGACTGTAGGTGAagatagattttttttgttttcgtCGATAACAGCTGTTCTGGGGTTTTCTGTATAACTTGTTTGTTTTATTGAAAAACACGATCTTTGATTGCT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004190 aspartic-type endopeptidase activity molecular_function

KEGG:

id description
K09596 SPPL2A; signal peptide peptidase-like 2A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2321331 lncRNA downstream 1863 40136822 ~ 40137036 (-) True G2029570
TU2321308 lncRNA downstream 64137 40073900 ~ 40074762 (-) True G2029555
TU2321267 lncRNA downstream 95430 40040947 ~ 40043469 (-) True LOC110516672
TU2321271 lncRNA downstream 98824 40039502 ~ 40040075 (-) False LOC110516672
TU2321285 lncRNA downstream 160965 39977210 ~ 39977934 (-) True G2029544
TU2321321 lncRNA upstream 867 40151643 ~ 40159254 (-) True G2029560
TU2321333 lncRNA upstream 9053 40159829 ~ 40160199 (-) True G2029572
TU2321340 lncRNA upstream 15886 40166662 ~ 40167388 (-) True G2029579
TU2321315 lncRNA upstream 16887 40167663 ~ 40172576 (-) False G2029558
TU2321316 lncRNA upstream 16887 40167663 ~ 40169277 (-) True G2029558
XM_036964068.1 mRNA downstream 2208 40044093 ~ 40136691 (-) False LOC110513022
XM_036964069.1 mRNA downstream 28198 40086962 ~ 40110701 (-) True LOC110513022
XM_036964066.1 mRNA downstream 28206 40044093 ~ 40110693 (-) False LOC110513022
XM_036964067.1 mRNA downstream 28206 40044093 ~ 40110693 (-) False LOC110513022
XR_005039825.1 mRNA downstream 95202 40039396 ~ 40043697 (-) False LOC110516672
XM_036963147.1 mRNA upstream 46358 40197134 ~ 40200019 (-) False pldn
XM_036963148.1 mRNA upstream 46358 40197134 ~ 40200027 (-) False pldn
XM_021585493.2 mRNA upstream 46358 40197134 ~ 40200820 (-) False pldn
XM_021585492.2 mRNA upstream 46358 40197134 ~ 40200916 (-) False pldn
NM_001160589.2 mRNA upstream 46364 40197140 ~ 40200729 (-) False pldn
TU2320355 other downstream 908089 39229129 ~ 39230810 (-) False G2028779
TU2320356 other downstream 908385 39229129 ~ 39230514 (-) False G2028779
TU2320352 other downstream 911840 39226363 ~ 39227059 (-) True G2028777
TU2319612 other downstream 1634764 38480602 ~ 38504135 (-) True LOC110506757
TU2319582 other downstream 1790543 38337853 ~ 38348356 (-) True LOC110506753
TU2321319 other upstream 48040 40198816 ~ 40200815 (-) True pldn
TU2321323 other upstream 116473 40267249 ~ 40269775 (-) True LOC110506132
TU2321668 other upstream 356970 40507746 ~ 40508282 (-) True G2029844
TU2321690 other upstream 400403 40551179 ~ 40567512 (-) False G2029858
TU2321988 other upstream 624938 40775714 ~ 40778988 (-) True G2030106

Expression Profile