RNA id: XR_005039825.1


Basic Information

Item Value
RNA id XR_005039825.1
length 3348
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC110516672
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 40039396 ~ 40043697 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatcgactgccgcaaaagcatgctctgTTTTTATGTCTTATGAATTTGTAGTTCGCAAATTTCTGTGAAAATAGACAAAATGCTTTTTGATCTTCGGCCAATAGAGagagcagagtacagtatattGAAAGTCTGTTGGTCGAATAGCAGATTATTTTAACCACTTCCTGTCTAGGCTTGATAAACCAGTCTACTTGTTACCTGAAGGGCGTGGTTATATGGGGGCCAGTGAATCTGCCGTTTACTCACATTGTTCGTAACAGTGCTCACCTGCTCTCACTTTGTCTCTTTCCCATTGCtctcacacacaaaaacacatcccAGAGAGGAGAAACTACCAAGAGAGAAGAATCATGTCTGTGGAAGTCCACATAGAATATTGTAGTGGATGAGGGTACGAGTCTCGCTATCAGGACCTAGCATCTGCCATCAAGCGGAACGTTCCTGATGTGACGGTGACGGGAACCACAGGGCGGCGCtCCAGTTTCGAGGTAACAGTGAATGGTAAATTGGCCTACTCTAAACTGGAGGCAGGAGGATTCCCAGACACCAAGGAGATGGTGGCGATGGTGAAGGAGGTGAGCCGTGGAGGAAAGGTCGAGAAAGTGAAGAAGAAGAATAATAAGTGTTTTCTCCAATAGATGAGTGGTtattgagagaaggagagtgttTTTTTAAGATCCTGGGTCCTGATCTGATTCTATTAATGATTGTTCACAATGAAACTAGGGATGTGAACATGAAGTCTACAGTCATTTCAACTCTGTGATCTGAGGGAAATactctcatcctgtgtctccgtGTTATACTGTCATGTCTTATGTTATTCCTTGCCTGTTTTTATTTCCTTATACAGACCAAGATATTATAGACTGACTGGCATTTAGTTTTACATTCTAAAAATATTGTACTCAATGTAGACTAGACCTCTGCAGTTGAATAGGCTGTACGTGTATTTTTAAATGATCAAATAAATTCTAGGAATCAATTAGTATTGAGTTTGTGTGTTGGGAGGGTGCTGTTGGACATTTACAATAATGCTGTTGGACATTTACAATAATGCTGTTGGACATTTACAATAATGCTGTTGGACATTTACAATAATGCTGTTGGACATTTACAATAATGCTGTTGGACATTTCCTGGTGTTGTTGGACATTTCCtggtgttgttgtgttattattGGATGTTGTGCCAGGCAATCTTTCCTATCTTCACTTTGCCTCTTTCACTTTCTTTCTTAGCGGGTGTGATGATGCAATAGATATACTGCCACGGCCTTTATAGCGGTCAAGGGATTTTATTTGATCTTATCTGATTTTGTGTGTAGGCCGAGACTGGATTCTATCCCCAAAAATGTTATTCCTCTGTGTGTTATATAATTGTAGAGGTACAAAGTCTTTAGTATTAGTTTTTATATGGCTGTATAAAGATGACAGTTTATTATCAAACTTGTGATAGAGATCACACTTCAGCCAAGAGGGGAATTTAATGCAGTTGAGATGTGGGAAAGGGAATTACCACTCTGCCATCTGGAGTTTTACTACATTTTTACCAAAACTGGATTCCATGTAACTTAGAGGTGATTGATTATTCATTATATCCACTCTATTAGCCTCTGTCAAATGCATTTTAAACTGTAATACATCTGTTCTGTGATGTCCTCCAGCATATTGGAGAATATTCTAGAATCTGACCCTTtctacccctctatctctctggcccccaTCTAACCATGTCCTTCAGGTAACAGGTGGATAGAGGGAGAGTCACGCAGCTTATCTGTGACAGTGCCCACCTGCTCTCACATCTCTTTcgcattgttctctctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaagagaagaATCATGTCTGTGGAAGTCCACATAGAATGTTGGGTGGTTATTGTTTAACGTTGTACTACATCTGTTAATGTCTACTCTACAATGTTAGGAGATCTGTTAATGTCTACTCTACAATGTTAGGAGATCTGTTAATGTCTACTCTACAATGTTAGGAGATCTGTTAATGTCTACTCTACAATGTTAGGGGATCTGTTAATGTCTACTCTACAATGTTAGGAGATCTGTTAATGTCTACTCTACAATGTTAGGAGATCTGTTAATGTCTACTCTACAATGTTAGGGGATCTGTTAATGTCTACTCTACAATGTTAGGAGATCTGTTAATGTCTACTCTACAATGTTAGGAGATCTGTTAATGTCTACTCTACAATGTTAGGAGATCTGTTAATGTCTACTCTACAATGTTAGGAGATCTGTTAATGTCTACTCTACAATGTTAGGAGATCTGTTAATGTCTACTCTACAATGTTAGGAGATCTGTTAATGTCTACTCTACAATGTTAGGGGATCTGTTGTTATACTAAAGAAAACAGTGAGACAGTGAACAAACTGTCTGAATGTGTTGGTGTGGAACCAATAGACTTCCTATTGGCTCAGGTTATTGATTTAAAGAGAGAGTTTGCAGACAAAAGCAAAACATTGACATGATTTTCCAATTAGAGAAACTCATTATTTACATCATCAGTCTAACATTTACCAACATTAACTACCCTCTCCATTTCTATTGTCAAGTTATAGATTTGACATGCCATgtgcagcctgtgtgtgtgtttacggtgTGTTATGCTAATGCAAACATCAAAACGAGCTCCCAGGGGGGGCCTAGGACCGAGTTCGGGAAACCCTGCTCCAGTAGATGAGTGGAGAGCAAGaggtggaaaggagagagggggaggacagtgtTTTATAAGATCCTGAGTACTGACCTGATTCTATTAATGATTGTTCACATTGAAACTAGGGATGTGAACATGGAGACTAGTTAGTTAAATAAAGcaaggcacgtcagttaagaaccaattcttattgacaatgacggctaaacctggacgatgctggaccaattgtgcgccgccctatgggactcccaatcacggccggctgtgatacagcctggaatcttccagggtctgtagtgacgcctcttgcactgagatgcggtgtcttagaccgctgcgacacCAGGGAGCCCCTAGAGTAATTTCAACGGTCTGTGATTTAAGGAAAATACTCTCATCCTGTCTGGTTTATACTGTTATGTTATGTTGTTATTCCTATGTTTTTATTTCATGATACAGACAGGGATATTATTTAGACTAGCATTTAGATTTATATTCTAGAAGTTATATTCTACTCAATATAGATCTCTGCAGTTGTACTTGTATTTTTAAATGATCAAATAAATGAAATCAATCCGt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2321285 lncRNA downstream 61462 39977210 ~ 39977934 (-) True G2029544
TU2321284 lncRNA downstream 63787 39975405 ~ 39975609 (-) True G2029543
TU2321283 lncRNA downstream 64559 39974180 ~ 39974837 (-) True G2029542
TU2321269 lncRNA downstream 71179 39966639 ~ 39968217 (-) True G2029528
TU2321263 lncRNA downstream 101007 39934703 ~ 39938389 (-) True G2029525
TU2321308 lncRNA upstream 30203 40073900 ~ 40074762 (-) True G2029555
TU2321331 lncRNA upstream 93125 40136822 ~ 40137036 (-) True G2029570
TU2321321 lncRNA upstream 107946 40151643 ~ 40159254 (-) True G2029560
TU2321333 lncRNA upstream 116132 40159829 ~ 40160199 (-) True G2029572
TU2321340 lncRNA upstream 122965 40166662 ~ 40167388 (-) True G2029579
XR_005039641.1 mRNA downstream 230633 39807917 ~ 39808763 (-) True LOC118944392
XM_021586628.2 mRNA downstream 773184 39257054 ~ 39266212 (-) True LOC110506772
XM_021586629.2 mRNA downstream 774170 39257054 ~ 39265226 (-) False LOC110506772
XM_021586627.2 mRNA downstream 785550 39243039 ~ 39253846 (-) False LOC110506771
XM_036963957.1 mRNA downstream 785550 39243039 ~ 39253846 (-) True LOC110506771
XM_036964066.1 mRNA upstream 396 40044093 ~ 40110693 (-) False LOC110513022
XM_036964067.1 mRNA upstream 396 40044093 ~ 40110693 (-) False LOC110513022
XM_036964068.1 mRNA upstream 396 40044093 ~ 40136691 (-) False LOC110513022
XM_036964069.1 mRNA upstream 43265 40086962 ~ 40110701 (-) True LOC110513022
XM_036963265.1 mRNA upstream 95174 40138871 ~ 40150775 (-) False LOC110526651
TU2320355 other downstream 808586 39229129 ~ 39230810 (-) False G2028779
TU2320356 other downstream 808882 39229129 ~ 39230514 (-) False G2028779
TU2320352 other downstream 812337 39226363 ~ 39227059 (-) True G2028777
TU2319612 other downstream 1535261 38480602 ~ 38504135 (-) True LOC110506757
TU2319582 other downstream 1691040 38337853 ~ 38348356 (-) True LOC110506753
TU2321319 other upstream 155119 40198816 ~ 40200815 (-) True pldn
TU2321323 other upstream 223552 40267249 ~ 40269775 (-) True LOC110506132
TU2321668 other upstream 464049 40507746 ~ 40508282 (-) True G2029844
TU2321690 other upstream 507482 40551179 ~ 40567512 (-) False G2029858
TU2321988 other upstream 732017 40775714 ~ 40778988 (-) True G2030106

Expression Profile