RNA id: XM_036963957.1


Basic Information

Item Value
RNA id XM_036963957.1
length 2140
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC110506771
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 39243039 ~ 39253846 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAGGGTTTTTCCTGTGGTGCAGGATACATCAACTAGGTTATTCAAGAAAACACAGCTTTTCGGACATAGCTTTGCAAGCTAAATATCTTCGACTCGATTTGCATGATGGTTTCGGAAGAACCAAATCTTCCGAACACGTTTGTGAAATTGTACTACATGTTGCAGGAAATGAAGCCAGCGAACACCGAGAGTGGTGTCCCTGTACTCCATTCAGCAAAAGAGGGGTGCAAACCCAAGAAATTCACCCCAGATGAGGTACTGGTACCAAATCCCAGCTTCAAAGAAAATCAAGGAATGAAAAGAAAGATACAACCTGGAAGTCTATCGATATATGAATTGGAACGGTTGGAAAATATCAGACAAAACCAAGTGTTCCTGTCCTCCATAAAACTGCTTGAGGCCAAGCAGGATTTGAAACCAGAAAAAACACAGCGAGGTCTCAAGAGACAGAACAATAAGGTAGCCTGGACAGAGATACTGCCTCCTCGCACCAAGTCCTTGAGAATCCAGAAGAAGGAAGCAGAGCGACTCCCCCTGCCCCCGGAACCACACAGGATTTATTATGAAGTCGAACGAATTGAACGTGCCAGGAAGCCAGAGGGTCCCATTAGTATGGAGCCAATCAACATGGAGGAGGATAGTTCACTGCCACCTGAACTTCTCAAGCTGTGGACAGAGGATTTAATCCAAGAAGAAAAGGAGGAGTTGGGTCTGGGAGAGTACCGTAGTACTCTGAAGAGCATGGAGCTGAGTGAGATTGGAGGAGTAGCTAAGGTGGTGAAGAGTCGTATCTTCTCTGTTGCCTTCCACCCGTGTAGCAGTCGTCTGCTCATGGCTGCTGGGGACAAGTTGGGTGGAGTGGGGCTCTGGAACCTCGACTCTGATATGGGGGATGAGGGCGTGCTGCTGTTTGAGCCACACGTCCAGCCGGTGGCCTGCATGGCCTTCTCCAGGTCACATCCTACAGACCTGTTGACCCTCAGCTACGACGGGACGTTACGGAGCACAGACGTGGAGAAAGCCGTTTTTGATGAGGTGTATCGGATCAAGGATGGCTTGAGAACCTTTGACTTCCTGTCACATGACTGTTCGACGCTGGTCACCGGGGACTGGTACGGAGACGTTGCCATTGTTGACAGGCGGACTCCAGGAACCTCTCATGAGTCCCTCCATAGCCTGGACACCAAGACGGTTCGCTGTGTTCACGTCCACCCTGTTCAGAAGCAGTACATCATGGTGGCTGAGAACAGTATTGTGAGCATTTACGATGCTCGATGTTTGAAGGCGTCGTCAACAGAGCCAGTCTCCCAGCTCTATGGTCACTCAAAGAGCATCTCAAGTGCCTACTTCTCTCCTGGCACTGGCAACAGAGTAGTGACCACCTGCCTAGACAACATCAGGATTTACGACACCTCGGAACTAACCTCCAGAGCTCCGCTACTGACCTCCATCCAACAGAACTTGTACACAGGGCGCTGGCTGTCCAAGCTGCAGGCGACGTGGGACCCCAAGAGGGACGATTGCTTCGTTGTGGGCAGCATGCAGCGGCCTCGCAGAGTCCAGGTGTTCCATGAGAGTGGGCAGCTCCAGCACTCCTTCCAGGACCCAGAGATAACCACTGTGCTCTCAGTCACAGCCTTCCACCCCACCAGGAACGCTCTACTGGGGGGTAACGCCTCCGGGCGGCTGTACGTCTTCACCGACTGAGAGCAGGATGCCTGTATGTGTTCGCTGCCTGAGAGTAGAAACCTTGGCCATTGTTCACAAAacatctgatctaggatcaggtaccCTCCctattattcattatgatctggaAGGCTAAACTGAtcatagatcagcactcctactctaaaatgtgaatcATGATACGGGCCTAGAACACATGCTTAGAATAGACCAAAATAAGTTGTTTAATGTTTTTCTGCAAGCTGCCTTTGTTGTTTTCTATCAAATTATTGatgttttgttagtttaaatAAAGTTGTATATTTAGCCGAAGTTGTGCTTTTCATGTAGTTTAGCTCTTTCATTGGCTGTATTGTGAGTGAATTTTGTGATTGATGGTTTTATTCTTTCAATAAAAACTACCAGAATTCAGTGGCTACAGCCCTACAATCATTAAAATCATGGCTAAA

Function

GO: NA

KEGG:

id description
K24755 WDR76, CMR1; WD repeat-containing protein 76

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2320361 lncRNA downstream 5923 39236913 ~ 39237116 (-) True LOC118944513
TU2320360 lncRNA downstream 6209 39236582 ~ 39236830 (-) False LOC118944513
TU2320358 lncRNA downstream 9091 39230947 ~ 39233948 (-) True G2028779
TU2320357 lncRNA downstream 9195 39230650 ~ 39233844 (-) False G2028779
TU2320306 lncRNA upstream 89 39253935 ~ 39254307 (-) True G2028736
TU2320368 lncRNA upstream 14776 39268622 ~ 39268825 (-) True G2028789
TU2320374 lncRNA upstream 20874 39274720 ~ 39275199 (-) True G2028795
TU2320381 lncRNA upstream 25830 39279676 ~ 39280425 (-) True G2028801
TU2320386 lncRNA upstream 30403 39284249 ~ 39284542 (-) True G2028806
XR_005039851.1 mRNA downstream 1226 39236314 ~ 39241813 (-) False LOC118944513
XR_002471033.2 mRNA downstream 18485 39220647 ~ 39224554 (-) False LOC110506770
XR_002471032.2 mRNA downstream 18489 39220647 ~ 39224550 (-) False LOC110506770
XR_005039798.1 mRNA downstream 140614 39087464 ~ 39102425 (-) True LOC110506758
XM_021586608.2 mRNA downstream 140625 39084335 ~ 39102414 (-) False LOC110506758
XM_021586629.2 mRNA upstream 3208 39257054 ~ 39265226 (-) False LOC110506772
XM_021586628.2 mRNA upstream 3208 39257054 ~ 39266212 (-) True LOC110506772
XR_005039641.1 mRNA upstream 554071 39807917 ~ 39808763 (-) True LOC118944392
XR_005039825.1 mRNA upstream 785550 40039396 ~ 40043697 (-) False LOC110516672
XM_036964066.1 mRNA upstream 790247 40044093 ~ 40110693 (-) False LOC110513022
TU2320355 other downstream 12229 39229129 ~ 39230810 (-) False G2028779
TU2320356 other downstream 12525 39229129 ~ 39230514 (-) False G2028779
TU2320352 other downstream 15980 39226363 ~ 39227059 (-) True G2028777
TU2319612 other downstream 738904 38480602 ~ 38504135 (-) True LOC110506757
TU2319582 other downstream 894683 38337853 ~ 38348356 (-) True LOC110506753
TU2321319 other upstream 944970 40198816 ~ 40200815 (-) True pldn
TU2321323 other upstream 1013403 40267249 ~ 40269775 (-) True LOC110506132
TU2321668 other upstream 1253900 40507746 ~ 40508282 (-) True G2029844
TU2321690 other upstream 1297333 40551179 ~ 40567512 (-) False G2029858
TU2321988 other upstream 1521868 40775714 ~ 40778988 (-) True G2030106

Expression Profile