RNA id: XM_021586629.2


Basic Information

Item Value
RNA id XM_021586629.2
length 1439
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC110506772
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 39257054 ~ 39266212 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTTCAAACAATGGATGTTACAGTATAATAAAGTCTATGCTCTGGAGGAGTACCACCATCGCCTGAACATCTTCACTGGGCATAAGAGGAGAATCCACTATCATAATGCAGGGAAGCACACGTTCTCAATGGGACTGAATCAGTTTTCTGACATGAGCTTTGCAGAGTTTAGGAAAACTTTCCTCCTGACTGAACCTCAGAACTGCTCTGCCACCAAAGGGAGTCACATCAGCAGCCATGGGCCATATCCTGGTTCTGTGgactggagagagaagggaaactATGTGTCACCTGTCAAATACCAGGGTCATTGTGGAAGCTGCTGGACCTTCTCCACTACCGGCTGTCTTGAGTCTGTTACCGCTATAGCTACTGGAAAACTCCCACTTCTGTCTGAGCAGCAACTGGTGGACTGTGCTCAAGACTTCAACAATCATGGATGTATGGGGGGACTCCCAAGCCAGGCGTTTGAGTATGTTAAATACAACAACGGACTCATGACCGAAGATGACTATCCTTACACGGGACATGATGGCTCTTGCAATTTCAAGCCCGAGTTGGCAGCTGCCTTCGTGAAAGATGTTGTCAACATAACAAGTTATGACGAAAAGGGCATGGTTGATGCTGTGGCCAGACTGAACCCAGTCAGCTTTGGATATGAAGTGACTGATGATTTCCTCCACTACAAAGATGGTGTGTACAGCAGCACTACGTGTAAGAACACTACAGACAATGTGAACCATGCTGTACTGGCAGTGGGATATGGTGAAAAGAATAGCACTCCATATTGGATCGTGAAAAACTCCTGGGGCACCAACTGGGGAATGGATGgATATTTCCTAATAGAACGAGGGAGGAACATGTGTGGACTGGCAGCCTGCTCCTCTTATCCTCTCCCCCCGGTGTGATGTAACGGGAACTCAGAAGAGAACGCCACAGTCAGTCTTCAGCTACAGTATGAGAAAAACAGGATACATTTTCTCATTCAGAGGACAGGAGTGGGCATCTCTGTATTATTTGCATGGACATGTTTTTAagaactgtagttatactgttaCAATGTGAGTTTTACATTTTCCAAGTTACTTATTTTAAATTAATTATAACTGGATCGTATTATGAAGGTTTGTACTGTATATGGTAAGTGGCTGGTCATGGTTAGTTAGTAGGCACTGACTGGGTAGTGAGAGTCTTTGAATCGTGTGCTTATGTAGCCACATATTGCTCTGGTTTTGAGTGTGTAAGAGATCCTAGTTAGTACTGTAGTTGACTACTGTCACAAAAGCATCACCAATATTTTAGCTTCTCTTGATTTGACATTTTGGTTAGTGTTATATTTTCTTTAGAGGTTTGTACTAGGCATATTTTGTGTATTTTAGACTGATGCTGCTGagggttgtaaaaaaaaatatatatatatacagtaccagtcaaaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2320306 lncRNA downstream 2747 39253935 ~ 39254307 (-) True G2028736
TU2320361 lncRNA downstream 19938 39236913 ~ 39237116 (-) True LOC118944513
TU2320360 lncRNA downstream 20224 39236582 ~ 39236830 (-) False LOC118944513
TU2320358 lncRNA downstream 23106 39230947 ~ 39233948 (-) True G2028779
TU2320357 lncRNA downstream 23210 39230650 ~ 39233844 (-) False G2028779
TU2320368 lncRNA upstream 3396 39268622 ~ 39268825 (-) True G2028789
TU2320374 lncRNA upstream 9494 39274720 ~ 39275199 (-) True G2028795
TU2320381 lncRNA upstream 14450 39279676 ~ 39280425 (-) True G2028801
TU2320386 lncRNA upstream 19023 39284249 ~ 39284542 (-) True G2028806
TU2320699 lncRNA upstream 172876 39438102 ~ 39510522 (-) True G2029088
XM_021586627.2 mRNA downstream 3208 39243039 ~ 39253846 (-) False LOC110506771
XM_036963957.1 mRNA downstream 3208 39243039 ~ 39253846 (-) True LOC110506771
XM_036963956.1 mRNA downstream 4624 39243039 ~ 39252430 (-) False LOC110506771
XM_036963959.1 mRNA downstream 4624 39243039 ~ 39252430 (-) False LOC110506771
XM_036963954.1 mRNA downstream 4633 39243039 ~ 39252421 (-) False LOC110506771
XR_005039641.1 mRNA upstream 542691 39807917 ~ 39808763 (-) True LOC118944392
XR_005039825.1 mRNA upstream 774170 40039396 ~ 40043697 (-) False LOC110516672
XM_036964066.1 mRNA upstream 778867 40044093 ~ 40110693 (-) False LOC110513022
XM_036964067.1 mRNA upstream 778867 40044093 ~ 40110693 (-) False LOC110513022
XM_036964068.1 mRNA upstream 778867 40044093 ~ 40136691 (-) False LOC110513022
TU2320355 other downstream 26244 39229129 ~ 39230810 (-) False G2028779
TU2320356 other downstream 26540 39229129 ~ 39230514 (-) False G2028779
TU2320352 other downstream 29995 39226363 ~ 39227059 (-) True G2028777
TU2319612 other downstream 752919 38480602 ~ 38504135 (-) True LOC110506757
TU2319582 other downstream 908698 38337853 ~ 38348356 (-) True LOC110506753
TU2321319 other upstream 933590 40198816 ~ 40200815 (-) True pldn
TU2321323 other upstream 1002023 40267249 ~ 40269775 (-) True LOC110506132
TU2321668 other upstream 1242520 40507746 ~ 40508282 (-) True G2029844
TU2321690 other upstream 1285953 40551179 ~ 40567512 (-) False G2029858
TU2321988 other upstream 1510488 40775714 ~ 40778988 (-) True G2030106

Expression Profile