RNA id: XM_036964069.1


Basic Information

Item Value
RNA id XM_036964069.1
length 2493
RNA type mRNA
GC content 0.53
exon number 18
gene id LOC110513022
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 40044093 ~ 40136691 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAGTGACAGATGGTATCTGTGGAGATCTGTTGATGCTGTGCTGCTGGTCTGCAGTGCTGGTGTGGTTGGTTGGCCAGGAGATGCGTGAAGGTTATTTGGTATGTTCCTGTACTCAGCCCTTGAACACCACCGCGATGAAGAAGAGGACAACTTCCAGtcCCAGAAATCCTGGATAGAAAGCACTTTCACCAAGAGGgaatgtgtccacatacttccaGTGTCGAAAGACCCCCACagATGCCTTCCAGGATGTCAGATCTGCCAGCAGTTGGTGAGATGCTGCTGTGGTCGGCTGGTACGGCAGCATGCTGGGTTTACAGCCAGCCTGGCCATGAAGTACTCAGACGTGAACTTGGGTGGGGGGGCAGAGGGTGGGGTGCAGCCGGAGTTGGAGGAGTGGGctgtggacaaacacacacaggagagcccTACAGACGCTTACGGCATCGTTAACTTCCAGGGAGGGTCGCACTCTTACAGAGCCAAGtATGTGCGTCTGTCCCATGACAGCAGGCCAGAGAGCATCCTGAGGCTGATGCTGAATGAGTGGCAGATGGAGCTTCCTAAGATCCTCATCTCTGTCCACGGAGGCATCCAGAACTTTGACCTGCACCCCCGAATCAAACAGGTGGTGGGGAAGGGCCTGATCAAAGCTGCTGTCACCACCGGGGCATGGATCCTGACAGGAGGGGTTAACACAGGTGTTGCCAAACATGTGGGTGATGCGTTGAAGGAACACTGTTCTAGATCGTCAAGGAAGATCTGTACAATTGGAGTCGCTCCCTGGGGCGTCATTGAGAACCGCAATGACCTCATCGGGAGAGACGTTGTAGCCCCCTACCAGACGTTGCTGAACCCCCTGTCCAAGCTCAACGTGTTGAACAACCTCCACTCCCACTTCCTGCTGGTGGATGATGGGACGGTGGGGAAGTACGGAGCTGAGGTCCAACTACGCCGCGAGCTGGAAAAACACATCAAACTGCAGAGGATACACGcacGAATTGGTCAGGGTGTTCCTGTGGTAGCGTTGATATTTGAGGGGGGTCCCAACGTAATTCTGACAGTGTTGGAGTACCTTCAGGAGACTCCACCTGTTCCTGTGGTGGTCTGTGAGGGGACTGGGCGTGCTGCTGACATGCTGGCCTATGTCCACAAACAGACTGAGGAGGGGGGGGGTCTACCTGACGGTGTGGAGATAGAAATCATCGCTACGATCAAAAAGACGTTCAACTTCAGCCACAGCGATGCTATACACCTCTTCCAGACCCTTATGGAATGTATGAAGAGCAAAGAACTGATCACTGTGTTTCATATCGGCTCTGAGGACCACCAGGATATCGATGTGGCCATACTGAGGGCATTACTGAAAGGCACCAATGAGTCTGCATTTGACCAGCTGGTTCTGACTCTGGCCTGGGACCGGGTGGACATCGCCAAGAACCATGTGTTTGTCTATGGACAGCAGCTACTGgtgGGTTCGTTGGAGCAGGCCATGCTGGATGCCTTAGTGATGGACCGTGTGGAGTTTGTGAAGCTCCTGATTGAGAATGGAGTTAGCATGCACAGGTTCCTTACCATCACACGGCTGGAGGAGCTATACAACACGAAACAGTCCCCTACCAATCCCACGCTCTTCAACCTCGTAAGGGATGTCAAACAGGGTAATCTCCCCCCTAACTACAAGATGACCTTAATTGACATTGGCCTGGTGATAGAGTACCTGATGGGCGGGACTTACAGGTGCAACTACACCAGGAAACGCTTCAGGATCATCTACAACAATCTCCATGGCAACAGCAGGaggtcAGGTCGCCACTCTGCAGGGCCTGGGTCCCACCTGAGGAAGAGCCAAGAGTCGTTCAGTATCCAGGCCGACAAGAAGGAGAAGACCAGGCACAACCACTTCATCAAGACTGCACAGCCATACAAacccaagTTGGAGTCGGCGACAGACCAGTCCAAGAAAAAAGCCAAGGAGGAGATTGTTGACATCGATGACCCAGAGACACGCAGGTTCCCGTACCCGTTCAATGAGCTGCTGATGTGGGCCGTCCTGATGAATAGGCAGAAGATGTCTCTGTTCTTCTGGCAGCATggggaggaaagcatggccaaggCCCTGGTGGCCTGTAAACTCTGTCGCTCCATGGGCTATGAGGCCAAGAAGAGTGACGTGGTCGACGACACCTCCCAGGAACTCAAGGACTACTCCAATGAATTTGGCACCCTAGCAGTGGACCTCCTGGAGCAGTCATTCAGACAGGATGAAACCATGGCGATGAAACTGCTGACCTACGAACTGAAGAACTGGAGTAACAGCACCTGTCTGAAGCTGGCCGTGTCGTCGCGGTTACGACCCTTTGTGGCTCACACCTGTACCCAACTGCTGCTGTCAGACATGTGGATGGGACGACTCAACATGAGGAAGAACTCCTGGTACAAGGTGATCCTCAGTATCCTGGTCCCTCCTGAGTAAACATAAATAAACATA

Function

GO: NA

KEGG:

id description
K04978 TRPM3; transient receptor potential cation channel subfamily M member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2321308 lncRNA downstream 12200 40073900 ~ 40074762 (-) True G2029555
TU2321267 lncRNA downstream 43493 40040947 ~ 40043469 (-) True LOC110516672
TU2321271 lncRNA downstream 46887 40039502 ~ 40040075 (-) False LOC110516672
TU2321285 lncRNA downstream 109028 39977210 ~ 39977934 (-) True G2029544
TU2321284 lncRNA downstream 111353 39975405 ~ 39975609 (-) True G2029543
TU2321331 lncRNA upstream 26121 40136822 ~ 40137036 (-) True G2029570
TU2321321 lncRNA upstream 40942 40151643 ~ 40159254 (-) True G2029560
TU2321333 lncRNA upstream 49128 40159829 ~ 40160199 (-) True G2029572
TU2321340 lncRNA upstream 55961 40166662 ~ 40167388 (-) True G2029579
TU2321315 lncRNA upstream 56962 40167663 ~ 40172576 (-) False G2029558
XR_005039825.1 mRNA downstream 43265 40039396 ~ 40043697 (-) False LOC110516672
XR_005039641.1 mRNA downstream 278199 39807917 ~ 39808763 (-) True LOC118944392
XM_021586628.2 mRNA downstream 820750 39257054 ~ 39266212 (-) True LOC110506772
XM_021586629.2 mRNA downstream 821736 39257054 ~ 39265226 (-) False LOC110506772
XM_036963957.1 mRNA downstream 833116 39243039 ~ 39253846 (-) True LOC110506771
XM_036963265.1 mRNA upstream 28170 40138871 ~ 40150775 (-) False LOC110526651
XM_036963266.1 mRNA upstream 28170 40138871 ~ 40150776 (-) False LOC110526651
XM_036963267.1 mRNA upstream 28170 40138871 ~ 40150776 (-) False LOC110526651
XM_036963268.1 mRNA upstream 28174 40138875 ~ 40150776 (-) False LOC110526651
XM_036963269.1 mRNA upstream 28198 40138899 ~ 40150776 (-) True LOC110526651
TU2320355 other downstream 856152 39229129 ~ 39230810 (-) False G2028779
TU2320356 other downstream 856448 39229129 ~ 39230514 (-) False G2028779
TU2320352 other downstream 859903 39226363 ~ 39227059 (-) True G2028777
TU2319612 other downstream 1582827 38480602 ~ 38504135 (-) True LOC110506757
TU2319582 other downstream 1738606 38337853 ~ 38348356 (-) True LOC110506753
TU2321319 other upstream 88115 40198816 ~ 40200815 (-) True pldn
TU2321323 other upstream 156548 40267249 ~ 40269775 (-) True LOC110506132
TU2321668 other upstream 397045 40507746 ~ 40508282 (-) True G2029844
TU2321690 other upstream 440478 40551179 ~ 40567512 (-) False G2029858
TU2321988 other upstream 665013 40775714 ~ 40778988 (-) True G2030106

Expression Profile