LOC118936287


Basic Information

Item Value
gene id LOC118936287
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 41906824 ~ 41916531 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039888.1
atggaagttgccaatcgcaatattaAGGATGGGGTGAGGAAAAAGGATGCACTGATTTATGAACCGGGGCACAAAATGAACGCTCCCTCTGACTCCGCCTACCActagcatgcttttgcggcacagtcgatagctgtttcattacaatattccAGCATACCGCTAGTGCTGTTCGAGTTAGGTTATAGATTTCCAGGACTAAAATTCGTTTTCAGCTGTAACTAATTAATCAAGATGAATTTCCGCAGTGCTACACTCAGGTATACGTTATCTTAGTGTAACCAGAGGAGGGTCCGTAACTATACCAATAACTGATGGCCAATGTCCTGAGTCGGACTTCGGATTATGCACAGAGAGGAAAGGCCCAGTGGTCACTTATGAGAACAACGTGATCACCGAGGGGCCAAATTATCTGGGCAGGATCCAGCTGATAAACGACTCCAATGGCTGTACTGTTGTAATTCACAATGTAACCAAAGAAGATACAGAGACAGTTTATTATTCAGACGGTGGTCTTCCAGGTCAACTGAGAATTGTACTTGAAATGACAAACATGACTGAGAGTTCAACCACTACAGCAGCCCCACAACCATCTACAACCACACGAGGAGGTAGCACTGAGAGTCTGACCACCACAGCAGCCCCACAACAATCTTCAACCACACCAGGTCTACTTGTGGAACATCTTGCTGGGCTGGTACCAGTAGgggggctggtggtggtggtggtggtatgcaTCAGCATATGTAAAAACAAAAAGTTGAAGGAAGAACCTCCCTTGGCCGAGCTCCAAGTTCTAAATCAAAACACATCAATGGACACAGCAGAACAATGAAAATGATATCTcgttagacaatctggaccctctctttctaaaactatcctccgccattgttgcaacccctattaccagcctgttcaacctctcttttgtatcgtccaagatccctaaagattagaaagctgccgcggtca
>XM_036964385.1
gcacctaatttatggaagttgccaatcgcaatattaAGGATGGGGTGAGGAAAAAGGATGCACTGATTTATGAACCGGGGCACAAAATGAACGCTCCCTCTGACTCCGCCTACCActagcatgcttttgcggcacagtcgatagctgtttcattacaatattccAGCATACCGCTAGTGCTGTTCGAGTTAGGTTATAGATTTCCAGGACTAAAATTCGTTTTCAGCTGTAACTAATTAATCAAGATGAATTTCCGCAGTtgtctgagtgttgcagtcatcTGGTTCCTGTCTTCCAGCCAGTCGAACTCCGTGCTACACTCAGGTATACGTTATCTTAGTGTAACCAGAGGAGGGTCCGTAACTATACCAATAACTGATGGCCAATGTCCTGAGTCGGACTTCGGATTATGCACAGAGAGGAAAGGCCCAGTGGTCACTTATGAGAACAACGTGATCACCGAGGGGCCAAATTATCTGGGCAGGATCCAGCTGATAAACGACTCCAATGGCTGTACTGTTGTAATTCACAATGTAACCAAAGAAGATACAGAGACAGTTTATTATTCAGACGGTGGTCTTCCAGGTCAACTGAGAATTGTACTTGAAATGACAAACATGACTGAGAGTTCAACCACTACAGCAGCCCCACAACCATCTACAACCACACGAGGAGGTAGCACTGAGAGTCTGACCACCACAGCAGCCCCACAACAATCTTCAACCACACCAGGTCTACTTGTGGAACATCTTGCTGGGCTGGTACCAGTAGgggggctggtggtggtggtggtggtatgcaTCAGCATATGTAAAAACAAAAAGTTGAAGGAAGAACCTCCCTTGGCCGAGCTCCAAGTTCTAAATCAAAACACATCAATGGACACAGCAGAACAATGAAAATGATATCTcgttagacaatctggaccctctctttctaaaactatcctccgccattgttgcaacccctattaccagcctgttcaacctctcttttgtatcgtccaagatccctaaagattagaaagctgccgcggtca
>XR_005039889.1
agatgactagaaacgattagGTTGACCATttaatgtgtggattaattgtcggagtagaggaccttgtgcatttcagTGCTACACTCAGGTATACGTTATCTTAGTGTAACCAGAGGAGGGTCCGTAACTATACCAATAACTGATGGCCAATGTCCTGAGTCGGACTTCGGATTATGCACAGAGAGGAAAGGCCCAGTGGTCACTTATGAGAACAACGTGATCACCGAGGGGCCAAATTATCTGGGCAGGATCCAGCTGATAAACGACTCCAATGGCTGTACTGTTGTAATTCACAATGTAACCAAAGAAGATACAGAGACAGTTTATTATTCAGACGGTGGTCTTCCAGGTCAACTGAGAATTGTACTTGAAATGACAAACATGACTGAGAGTTCAACCACTACAGCAGCCCCACAACCATCTACAACCACACGAGGAGGTAGCACTGAGAGTCTGACCACCACAGCAGCCCCACAACAATCTTCAACCACACCAGGTCTACTTGTGGAACATCTTGCTGGGCTGGTACCAGTAGgggggctggtggtggtggtggtggtatgcaTCAGCATATGTAAAAACAAAAAGTTGAAGGAAGAACCTCCCTTGGCCGAGCTCCAAGTTCTAAATCAAAACACATCAATGGACACAGCAGAACAATGAAAATGATATCTcgttagacaatctggaccctctctttctaaaactatcctccgccattgttgcaacccctattaccagcctgttcaacctctcttttgtatcgtccaagatccctaaagattagaaagctgccgcggtca

Function

NR:

description
uncharacterized protein LOC110506826 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039888.1 False 975 mRNA 0.46 5 41906824 41915913
XM_036964385.1 False 1039 mRNA 0.46 6 41906824 41915924
XR_005039889.1 True 803 mRNA 0.46 5 41906824 41916531

Neighbor

gene id symbol gene type direction distance location
LOC110506831 NA coding downstream 11529 41891935 ~ 41895295 (-)
LOC118944570 NA coding downstream 13579 41893131 ~ 41893245 (-)
LOC110506142 LOC106562525 coding downstream 43892 41827548 ~ 41862932 (-)
LOC110506143 LOC106562454 coding downstream 126956 41755021 ~ 41779868 (-)
LOC118944455 lysm2 coding downstream 168731 41723275 ~ 41738093 (-)
LOC110506839 NA coding upstream 68107 41984638 ~ 41986095 (-)
LOC110506148 LOC106587747 coding upstream 69754 41986285 ~ 42056568 (-)
LOC110506147 bend2 coding upstream 151201 42067732 ~ 42070472 (-)
LOC118944459 tubgcp4 coding upstream 201890 42118421 ~ 42138004 (-)
LOC110506841 cart coding upstream 231233 42147360 ~ 42148871 (-)
G2030942 NA non-coding downstream 1748 41890181 ~ 41905076 (-)
G2030937 NA non-coding downstream 3752 41887698 ~ 41903072 (-)
G2030831 NA non-coding downstream 40504 41866019 ~ 41866320 (-)
G2030830 NA non-coding downstream 42490 41864096 ~ 41864334 (-)
G2030784 NA non-coding downstream 82783 41823533 ~ 41824041 (-)
G2030982 NA non-coding upstream 57724 41974255 ~ 41977636 (-)
G2030984 NA non-coding upstream 61963 41978494 ~ 41978943 (-)
G2031004 NA non-coding upstream 115251 42031782 ~ 42032359 (-)
G2031017 NA non-coding upstream 144347 42060878 ~ 42061560 (-)
G2031029 NA non-coding upstream 178102 42094633 ~ 42094991 (-)
LOC110515873 LOC106562546 other downstream 338911 41461857 ~ 41567947 (-)
G2030291 NA other downstream 694972 41211477 ~ 41211852 (-)
G2030156 NA other downstream 999631 40906623 ~ 40907193 (-)
G2030162 NA other downstream 1007803 40898470 ~ 40899021 (-)
G2030157 NA other downstream 1018140 40887603 ~ 40888684 (-)
LOC118944568 LOC106562433 other upstream 299908 42214901 ~ 42217502 (-)
G2031225 NA other upstream 426751 42343282 ~ 42346725 (-)
G2031259 NA other upstream 451723 42368254 ~ 42369909 (-)
G2031286 LOC106562727 other upstream 542726 42459257 ~ 42461315 (-)

Expression


Co-expression Network