G2025159


Basic Information

Item Value
gene id G2025159
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 35732888 ~ 35739367 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2316234
TTCCATAACTACCGCAGAGCAGTAGACAACACATTACGGAGAGAACCCAATAGATGATTACAACATCAATGGAAAACGTTAAAACACTTCTCACTGTTTAGACTGATCTGACTGCTCTACTACGAGGACACTAAACACTGACCCATGAGCAGCAGGCCCCTGCCtcaatgtgtctgtctgtatgcattTAGTGCTGGCAGGTGCATACATTTCTCCACAGAGTCAAAACGACAATGGGTTAGTGATGTAATCAGCCAAATGATACACATAGCATATACAAAGCCCAATGTATGCACTGGTGACATCTATATGCAGATGGTTCTTCTATGCTAGCGCTGACAGAGCTGTTTGACATAAGAGATAgtgcacacacagtgcattcgaaaatgactttttccacattttgtcacagccttattctaaaatggattttaaaataacctacacacaataccacaatgacaaagcaaaaaaaggtttaggaatgattcagaccctttgctttgagacccgaaattgagctcaggtgcatcctgtttccattgatcatccatgtttctacaacttgactggagtccacctgtggtaaattcaattgattggacatgattagaAAGGCTGTCTATAGgacgtcccacagttgatagtgcatttCAGAGAACCCCCCCTTGAGGagctgcaaagaagaatgggagaaactacccaaatacaggtgtgctacatttgtagcttcatacccaagattCAAGGCGTTTAATCGCTGtctgaatacttatggaaatgttatttcagtttttgctttgtcattatggggtattgtgtgtagactggggggggggggggaatcaatttaatacattttagaataaggctgtaatgtaacgatgtggataaagtcaaggggtctgaatacttgacTGTAAGATGCTGAAAATGTATAAATGCAGTATGCAGGTGCCAGTTGTGAAAAAGGAGTTGAGTAATGCCACTATCTACAGGTCAGTTGTGGAACTGCAATCAGAGGTTGCCATAGCGGACATTTCAGCAAGGGGTTGTTGACATAttctgaacaaaaacataaaaccaaCCAAAACCTCAGCTCCCTTTTGAAGTAGACCAGCCACATATTAAAACAAAATGGCCCATGACTCATAAAATGGTTTCCAAACTAACTTGGTCACTCATCACTGAAAGGGAAAACAGCAACATTAGTACTGTACCTGACCAATTATACTTCCACTAGTCCCATCCAAATATGTGACACAAGAGTATGGACTCTAGTGTTAATACGTATAACGTGTATAGTAACTATATATTCATAACACAATAAATACATGAATACATTTTCATAATGGGTAAATTACCGAAGGGAAAAGATTACCTCCCACACCTATGGATCTTTGACATATATTGTAGACTTTTTCTAAAATCATTATGTCCTCTAACTGTAATTCTATGAGTCTGGGAAAACTAAAAACATTGCTGTTGTATAGGGCTGTGTGTATGAATGAGTGATTTGTCCCCAGCCAACCAGTAATCTATAGGGCTGTGTGTATGAATGAGTGATTTGTCCCCAGCCAACCAGTAATCTATAGGGCTGTGTGTATGAATGAGTGATTTGTCCCCAGCCAACCAGTAATCCATAGGGCTGTGTGCGCGTTACCTGACTAAGACCAACTGTTAACACTgtctgtgcatcccaaatggcaccctattccctatttagtgaaagtagtgtactatatagggaaggGGGTATAATTTGGAAAGAAGCCTGTCAAACACATTCAGAGAGCGCAGCCAAGTAGAAATAGAATGCTGATGATTTATGTTGGCAATGAAACCCAAACCTGCCACTACTCAGATTAGCAGGCAAATGTGCACATCTACATTTGTCTTGAATCAGTATTATCCtgtaaaaagtacatttgtgaTCATTTTTACCCAAAAAGATTTTTCCGCATGTTTCTTTTTGTACAAATCTTTGTATAATCTGCTTACACAACCAAAAAATATCCTTCCATCAACAAAAACATTAAGTCATAGTATCCACTTACAGATTGCATTTTGAGGTTTAGTCTGTCAATCtgtgtacattttttttcttcttcaatatAACATTTTGTACATTTGTTATTTAtgcattttattatttaaaaaaaaccttTTCTTGCTGAAGTATGTTCGCCAGCCAAGTTCCAGGTATTGCGCATAAAAATCCACATGACTTTCCAGACACTTATTCCTCAAACACCAGATGGCGCTATGGTAAAAGGCAAGATTTGTAGGTACTGGATGTGGTGTGTAGCTCCACTGTAGAACGTGTATATGTCAAGGAAGAAAATATGCATTTCTTTCTAGAACTAAGCCCCAGCATTTCCCATCTCTTTTTTTTTGGGTTATTTTTCAGCTATAAAAAGATGCATGTCGCTTGAGAGAAGGAAGATCCTTAATACTACTCAGTCAGTACTGGTCTGGCAGCAGAAGTGGGACAGTCAGGCTGTCAGTCTGTTGCAGAGCAGACCAAGACAGCCCTATCTGCAGAGGTCCTGGGCCTCTGAGTGCTGCTGAGGTTTCCTCTTCTTGCTGTTGCCCTGGTAGTGTGGCTTGCTGCTCGGGTGGCTCTTGATGTTGGATGAGGACGAGTTCTGCTGGACGTGGTGGGTGTTTTTACTGGACGAGCGGAACAACCTGG

Function

NR:

description
non-canonical poly(A) RNA polymerase PAPD5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2316234 True 2695 lncRNA 0.40 3 35732888 35739367

Neighbor

gene id symbol gene type direction distance location
sdr42e1 LOC106562336 coding downstream 48238 35681082 ~ 35684650 (-)
LOC110506725 LOC106562378 coding downstream 52223 35640874 ~ 35680665 (-)
LOC110506723 LOC106562376 coding downstream 125602 35562415 ~ 35607286 (-)
LOC110506721 LOC106562390 coding downstream 184098 35401501 ~ 35548790 (-)
pepd LOC106562343 coding downstream 683202 35038585 ~ 35049686 (-)
LOC110506732 brd7 coding upstream 73636 35813003 ~ 35820892 (-)
LOC110506734 LOC106562388 coding upstream 238724 35978091 ~ 35980950 (-)
LOC110506737 LOC106587587 coding upstream 405125 36144492 ~ 36159531 (-)
LOC110506738 tox3 coding upstream 760523 36499890 ~ 36564258 (-)
LOC110511520 LOC106587590 coding upstream 1031522 36770889 ~ 36783965 (-)
G2025095 NA non-coding downstream 123690 35608181 ~ 35609198 (-)
G2025086 NA non-coding downstream 172841 35559824 ~ 35560047 (-)
G2025080 NA non-coding downstream 195307 35537239 ~ 35537581 (-)
G2025079 NA non-coding downstream 195741 35536934 ~ 35537147 (-)
G2025008 NA non-coding downstream 326212 35406146 ~ 35406676 (-)
G2025187 NA non-coding upstream 50592 35789959 ~ 35791779 (-)
G2025336 NA non-coding upstream 177297 35916664 ~ 35916872 (-)
G2025337 NA non-coding upstream 177785 35917152 ~ 35917410 (-)
G2025339 NA non-coding upstream 182159 35921526 ~ 35921829 (-)
G2025340 NA non-coding upstream 183725 35923092 ~ 35923409 (-)
G2025061 NA other downstream 235085 35495787 ~ 35497803 (-)
G2024949 NA other downstream 332921 35396074 ~ 35399967 (-)
G2024673 NA other downstream 804507 34876422 ~ 34928381 (-)
LOC110506691 LOC106562361 other downstream 1230402 34499589 ~ 34523950 (-)
G2025757 NA other upstream 603789 36343156 ~ 36343434 (-)
LOC110506740 LOC106562403 other upstream 1095366 36793286 ~ 36913660 (-)
G2026993 NA other upstream 1681044 37420411 ~ 37421037 (-)
G2027052 NA other upstream 1751485 37490852 ~ 37491416 (-)
LOC110506753 LOC106587607 other upstream 2598486 38334242 ~ 38373760 (-)

Expression


Co-expression Network