LOC110507226 (LOC106581479)


Basic Information

Item Value
gene id LOC110507226
gene name LOC106581479
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 40857130 ~ 40878102 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110507226
ATGACACCACGTTCCCATAAcgtgaaggcagacgcactgtcccggctgaATGACACAGAGGAGCGTTCCATGGATCCCACCCCTATACTCCCGGCCACCTgcctggtggcgccggtagtgtgggagctggacgcagaCATTGAGCAGagtcagaccaaGACTCCTGCGGGGGATGACTGGTTCCGGCGTGCGGAGGAAACATGGGACGCCGCCCATGTTCACCTTCAGCGTGCCGTGCTGCGCCAGAAAGCCTgcgcagaccgtcaccgcagtgaggccctgGAGGACccggtctggctctcgaccccaAACATGccactccgcctgccctgccggaagctgtgTCAGCGGTTTGTGGGGCAATTCAAAGttctgaggagactgaacgaggatGGTGGTAGTCATAGACGTAACCCCTTCCTGCTGCCTGGGGTCCGGCTGGGCTACCGTATCCTGGACAGCTGTAATCAGCACCACCGGAGCCTGCGAGGGGCACTGTCCCTGGTGTCAGGGGGGAACATCAGATCACGGCCATCTAGTGACTGCCCTGTTCCTCTGGTCATTGGTGATGCATCGTCCACTCAGACCATCATCCTGGCCAGGACCCTGGGgcctctctctgtgcctgtgATCAGTTACCAGGCCAGCTGTGGCTGTCTCAGTGACAGACAGGAGTTCCCTAACTTCTTCAGGACCATCCCCAGTGATGTCTACCAGGCCCTCACCATGGCCCGGCTCACCTGGCTCTTGGGATGGACCTAGGTGGGGGCTATTGCTATAGACAATGACTACGGTCGTCTGGCCATACAGGTGTTTGAGGAGGAGATTCGGGGGACGGGGGTGTGCCTGGCGTTCTTTGAGACCCTCAACCGGGCGAACCTGGTGAGGGATGTGAAGCGAGCAGCAGACACGGTCCAGGCCTCGACAGCGCGGGTGATCCTGGTCTTCCTCTGGTACACTGACATGGGGGCGTTACTGCACCAGCGGACAACTCCTACGAAACCCCGCCCTCCTTAACATCGCTCAGGGCGTCGTGGGTGTGGCTATCTGCAGTGCACCTATTCCTGGCTTTGAGGTACACCTTCGAAGTCTCAACCCCTCTCATTGTCCCGGAGATGTCCTGTTGAAGGAACTCTGGGAAACGGTGTTTGGTGGGGCAGAGACTCTGGAGGGGATACAGAGCCCCTTCACAGACACCTCCCAGCTGAGAATAACCTATAACGTGTACCTGGCTGTGTATTCTGCACAGCCTGCTGTCCTGCCCCCAGAGACACAGCCCTACCTGGGGCAGCAGCTTCACCTGCTCCCTTCCTTACAACATCAGCCCAGCGGAGCTGTTGCAGCACCTGAACCAGGTTAACTTCACCACTCCACTTGGGGAGCTGTTCTACTTCCGGGGCGCGGACGTCCCTGCTGTGTACGACCTTGTGAACTGGCAGGCCACGCCCCAGGGGTTGCTCAAACTTGTCACAATTGGCCGTGTAGACGGGTCTAATCTCCTCATCAACCAATCAGCCATCCAGTGGAACACAGGATCTAATATGGTGCCTGTGTCAGTGTGCAGTGACAGCTGTCCCCCAGGCACCCGTGTAGCCAGGAAGAAGGGGGAGCCTGTCTGCTGCTTCGAATGCATCTCCTGTGCTGAGGGAGAGGTCAGCAACACCACAGGCTCTTTGCAATGTGACCGGTGTCCTCTGGAGTTCTGGTCCAACAGCCATTGGACCGCCTGCGTCCCTCGTCAGCTTGAGTTCCTGTCCTTCAATGACGTGATGGGCGTCACCCTGACCACTGTTGCCGTGTGCGGCGCTGTGGCAACAGTGGCTGTGTTTATGTTCTTTGTGTACCACCGCCACACCCCTCTGGTGTGGGCCAACAACTCGGAGCTGAGCTTCCTGCTTCTCCTGTCACTCAAGCTCTGCTTCCTGTGTTCATTGGTGTTCATTGGCCGTCCCTCTGTGTGGGCGTGTCGGATCCGCCAGGCAGCATTTGGGGTCATCTTCGTGCTCTGCCTCTCCTGCCTCCTGGTCAAGACCATCGTTGTTCTGGCTGCGTTCCGCTCAGCCAGGCCTGGTGCTGGGCAGCTGATGAGGTGTTTTGGACCCGTTCAGCAGAGAGGGAGTGTCTTCCTCTTTACCAGTGTTCAGGTGATCATCTGTGCCGTGTGGCTGTCCATGAGCTCTCTCCTGCCTTACCGTGACCTAGGCCTCAAGGGGTCAAAGGTCATCCTGGAGTGTGAAGTGGGCTCTGTGGTTGGCTTCTCTCTGGTGCTGGGCTACATTGGCCTGctggcctccctctgtctcctcttagCCTTCCTGGCCAGGAAACTCCCAGACAACTTCAACGAAACCAAGCTCATCACCTTCAGCATGCTGATCTTCTGTGCTGTGTGGATTTCATTTGTCCCTGCCTACATCAGCTCTCCTGGGAAGTACGCAGACGCTGTAGAGATATTCGCCATCTTAGCTTCCAGCTTTGGGTTACTGCTTTGCATCTTTGCTCCGGAGTGTTACATCATCCTCCTGAGACCAGAGAGAAACACCAAGAAACACATTATGTCCAAATAGgaaccaccaagaaacacatgaTGTCCAATTAGAAACCAGCAAGAAACACATGATGTCCAATTAGAAACCAGCAAGAAACATATGATGTCCAATTTAGAAACCACCAAGAAGTATATGATGTCCAAATATAGTCTTCAATGTGTTTAGTTAATCACACCATCTCACTATTGTTTTGTATGGTAAAACCTTAACAAGGAATTACATGATACATTGTATAATACTTACCAGCAAGTTACATATTTAACAGACAATACCTAAAGTTGATGGACACAAATGAACAGGACTTTTCTACCCTGCTGGTAGTGTATGTTTCTAATGATTCAAAAGTGAGTCAGCAGTGACTCATGGTTCAGTCAACAGTGAATCAATAGTTAGTCAACAGTGAATCAACACTTAATAAGTCTTCCTCTGAATCCCATCATCAATTTAATGACATCCATTTCTCCCCTGAATGTTAGTTCTGAAAACAAATCAGTTCAATTAGATATGGTTAATGAAAAATGTTGTTTTCTCCTTTCACAT
>TU2381782
GCCATCTAGTGACTGCCCTGTTCCTCTGGTCATTGGTGATGCATCGTCCACTCAGACCATCATCCTGGCCAGGACCCTGGGgcctctctctgtgcctgtgATCAGTTACCAGGCCAGCTGTGGCTGTCTCAGTGACAGACAGGAGTTCCCTAACTTCTTCAGGACCATCCCCAGTGATGTCTACCAGGCCCTCACCATGGCCCGGCTCACCTGGCTC
>TU2381784
CCGGGGCGCGGACGTCCCTGCTGTGTACGACCTTGTGAACTGGCAGGCCACGCCCCAGGGGTTGCTCAAACTTGTCACAATTGGCCGTGTAGACGGGTCTAATCTCCTCATCAACCAATCAGCCATCCAGTGGAACACAGGATCTAATATGGTGCCTGTGTCAGTGTGCAGTGACAGCTGTCCCCCAGGCACCCGTGTAGCCAGGAAGAAGGGGGAGCCTGTCTGCTGCTTCGAATGCATCTCCTGTGCTGAGGGAGAGGTCAGCAACACCACAGTTCAGTGAACTGAATATCATCAGTCTTCTCACATCACTGAGGTGGGTGGTTATTCCC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110507226 False 3089 mRNA 0.56 14 40857130 40878102
TU2381782 False 217 lncRNA 0.59 2 40873861 40874825
TU2381784 True 332 lncRNA 0.56 2 40876026 40876430

Neighbor

gene id symbol gene type direction distance location
LOC110508042 LOC106613262 coding upstream 9989 40840706 ~ 40847141 (+)
LOC110507225 LOC106581476 coding upstream 17066 40692403 ~ 40840064 (+)
LOC110508037 LOC106581457 coding upstream 187051 40661246 ~ 40670079 (+)
LOC118944712 NA coding upstream 188498 40667017 ~ 40668632 (+)
ssr3 LOC106581450 coding upstream 559578 40294831 ~ 40297552 (+)
LOC118944684 LOC106613262 coding downstream 26412 40904514 ~ 40907313 (+)
LOC110508044 LOC106581474 coding downstream 113976 40992078 ~ 40996568 (+)
LOC110507231 LOC106581468 coding downstream 285141 41163243 ~ 41168484 (+)
LOC110508049 LOC106581477 coding downstream 302384 41180486 ~ 41185464 (+)
LOC110508050 LOC106581466 coding downstream 316698 41194800 ~ 41203695 (+)
G2082888 NA non-coding upstream 14023 40842828 ~ 40843107 (+)
G2082609 NA non-coding upstream 44779 40812095 ~ 40812351 (+)
G2082604 NA non-coding upstream 51208 40805473 ~ 40805922 (+)
G2082554 NA non-coding upstream 160596 40695608 ~ 40696534 (+)
G2082922 NA non-coding downstream 17314 40895416 ~ 40897545 (+)
G2082974 NA non-coding downstream 54641 40932743 ~ 40933003 (+)
G2082985 NA non-coding downstream 62659 40940761 ~ 40941063 (+)
G2082987 NA non-coding downstream 64400 40942502 ~ 40942830 (+)
G2083002 NA non-coding downstream 99051 40977153 ~ 40977372 (+)
G2082162 NA other upstream 899379 39957215 ~ 39957751 (+)
G2081949 NA other upstream 923295 39931874 ~ 39933835 (+)
LOC110507223 LOC106613251 other upstream 944052 39781189 ~ 39938079 (+)
G2081884 LOC106581433 other upstream 1019747 39827658 ~ 39837383 (+)
G2083005 NA other downstream 103268 40981370 ~ 40984854 (+)
G2083239 NA other downstream 334102 41212204 ~ 41212772 (+)
LOC110507232 LOC106593204 other downstream 628257 41485189 ~ 41507173 (+)
G2083851 NA other downstream 1093157 41971259 ~ 42112036 (+)
G2084156 NA other downstream 1382421 42260523 ~ 42261637 (+)

Expression


Co-expression Network