G2082378


Basic Information

Item Value
gene id G2082378
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 40253653 ~ 40253962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2381148
CACGTGTCCAGCATTCCACCCAAACCAACGTGCGTAACCTCCTGTTGTTCGTGTTCTGACATGTCTATATGAGGCTTATGAAAAAAAATAACGTGCGGATATGATTTCCATATAGACGGCCTACACATCTGACATACCAGGTGTTTCCTTTCATGGGCAGGTCTGGGATCATCTAACTCCCACCCATCTTGCATTTTACATATACAGGGctttaggaaagtattcagaccccttgatttttttcccacattttgttacgttacaacctctattctaaaatgaattgaTTCAATAAAAAacattcctcagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2381148 True 310 lncRNA 0.41 1 40253653 40253962

Neighbor

gene id symbol gene type direction distance location
LOC110507223 LOC106613251 coding upstream 315574 39781189 ~ 39938079 (+)
LOC110507222 LOC106581437 coding upstream 552441 39694561 ~ 39701212 (+)
LOC110508028 neus coding upstream 572093 39667989 ~ 39681560 (+)
LOC118944799 NA coding upstream 1214028 39039573 ~ 39039625 (+)
LOC110508002 LOC106581401 coding upstream 1625483 38619550 ~ 38628170 (+)
ssr3 LOC106581450 coding downstream 40869 40294831 ~ 40297552 (+)
LOC110508037 LOC106581457 coding downstream 407284 40661246 ~ 40670079 (+)
LOC118944712 NA coding downstream 413055 40667017 ~ 40668632 (+)
LOC110507225 LOC106581476 coding downstream 438441 40692403 ~ 40840064 (+)
LOC110508042 LOC106613262 coding downstream 586744 40840706 ~ 40847141 (+)
G2082377 NA non-coding upstream 454 40252837 ~ 40253199 (+)
G2082314 NA non-coding upstream 119262 40133934 ~ 40134391 (+)
G2082312 NA non-coding upstream 123271 40130089 ~ 40130382 (+)
G2082310 NA non-coding upstream 127956 40121654 ~ 40125697 (+)
G2082309 NA non-coding upstream 131245 40118393 ~ 40122408 (+)
G2082379 NA non-coding downstream 152 40254114 ~ 40254546 (+)
G2082384 NA non-coding downstream 11046 40265008 ~ 40265232 (+)
G2082325 NA non-coding downstream 44997 40298959 ~ 40300524 (+)
G2082474 NA non-coding downstream 256663 40510625 ~ 40512009 (+)
G2082475 NA non-coding downstream 259093 40513055 ~ 40513280 (+)
G2082162 NA other upstream 295902 39957215 ~ 39957751 (+)
G2081949 NA other upstream 319818 39931874 ~ 39933835 (+)
G2081884 LOC106581433 other upstream 416270 39827658 ~ 39837383 (+)
G2080014 NA other upstream 2308502 37944932 ~ 37945151 (+)
G2083005 NA other downstream 727408 40981370 ~ 40984854 (+)
G2083239 NA other downstream 958242 41212204 ~ 41212772 (+)
LOC110507232 LOC106593204 other downstream 1252397 41485189 ~ 41507173 (+)
G2083851 NA other downstream 1717297 41971259 ~ 42112036 (+)

Expression


Co-expression Network