LOC110508509 (LOC106600390)


Basic Information

Item Value
gene id LOC110508509
gene name LOC106600390
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 10677802 ~ 10681747 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589070.2
CTACGGACACCGTAGGACTCTTTAATGATCATATGACCACGCGCTTCTCCCATCCTTTGTTGTCGCGGAAGTAAAGACCCATCAGTGGTAGCTAGCAAAAGTGGTTAACAGTTAACTCAAGCAGTTTACCTTCCCAAAAAGTATACTTAACTGGGTGtgtctcccatagacaccaatgcaatagcagctgggtctgACTTCCATGGAAACAGGAAAAAAAACAGCGAGTCGCTTCCTCTTCCGTCTCTGGTAGTTTGCTATTGTATTGTCTTTTCCGACTGAACATTATCTTTAGAAACATAACACTAGTCAGATAAAATGTTGTTCCAGGAGAATATAACCAATTGTGTTACCTTTCAGACCAAAATAACCTCGGTTATGGATGTGTTAGCCAAAGCTGCGGTGGCAGAAATAAGTAAAATGTTCGATGATGGTTTTACTGTTTTACGCTTGGAAATGTGTCGAAGAGAAAATGAAATCGAAGCGTTAAAAAGAAAATTATTGTTTGTGGAGAACGAACGGCAAAGGACGACGTCCAAAGCGCGAGAAGCAGGCTGTTCTTCAACATGCTCTTTGTCTTccagcagaacagagcaggGGTCCAAGGGGTCTGATAAGGATGCTGGTGAATGGACTTCATTTGAGCAGACCGCGAGAGACAAAGTGTTCACACCTAAAGATGACCAACGGGATCAAAATAGACCACAGCCACCTAAAGAATCAGTAGTGGGGCTTAATGAACAGTACAGGTCTGGCCAGCGAGAGGAGAAGGGTAGTGGACTAGAATTAGTGGTGAAGACCGAGCAAGAGGAGGAGTATGACATTATTTCACTACATACATCAGGAAGTGAACATGGCACAGAGAGATCAGATCATCAGGAAACTGAGTTTGCCATGGATGACCGAGAGAGTCAGCTGTGGGCGTCTGTATCAGAGATTAACTGTGACTCTGAGGGTCCAGATTGCTCATATGGTACAGAACAATATAGACAGGATCTCAATACAGACATACAGCTTATTCAAAGTGCTGTGGAGGGTCTGGATAGCGATCCATCATCAGAGATGGGGTACATAAACAGACTAATGAAAGAAGAGATGCGAGCACAGTCTGTTTGGAATGACCGAAGTAGGACCTCTACAGATTTGGTTCATGCACAACCAGGTCAGCACAGAGAGCAAACTATGCAcccagagagaagggaggatggaaCTACTACTAGAGTGCCATCAGACAAACAAACGCGAGCCAATGAGAGTGGAGCATATTCCAACATTTGGCTAAACAATGTATTCTCGTTTGCCCCAAATGGTTTCAACTCCCCAAAAGTAGCCCCACAGGGAACCCCAGCAGGAGAGAAGCGGTTTGTTTGTACCTACTGCGGAAAGAGCTTTGACTGGGTCAGCCACTTGGAGATGCATCAACGGATTCATACGGGAGAGAAACCGTACAACTGTGTGACGTGTGGGAGGTGTTTTGCTCAGCAGAGTAATCTCCGCACACACCAGCGAGTACACAGGGGTCTCAGAGCAAAGCCAACAGTCTACTGATGATTATCACCATGACAAGACAATTAAGAACATTCTAGAGAAACCAGCTGGGGCCCGCCCCACACATTATGAAACAACCTcattaaccacgtttccatccagttTTTATGCGAGGAAAGTCATACCATATTAAAACAAAATCACAGCTGTGATGTTTCAGTGCAATTTCATAAATTCTGACAGATAATTTGTTTGTTCTacctttttgtgtctgtaaaatgtattatgtgagaaatgacagtggaaacacctttatgcgcaaatatttatataataaccatatcaaagtaaacttggagtcacaatTATATTGTGGGTGGTCCTCCCATACGACTTGGGAAACCAtggtttattaggctacagattcaGTTATAAACTTCACAGCCCAATAGGCAAAAACTAGTTGCATCATTGTTTCCATgttatttcaacaacaaaaatgtaatctgatgacgttgaatcaacctggaaaactgattggatttgccaAAAGTCTTAACTGTAAGGAAATGGTCTTTTTcatccaacttttaacctaaatctaatgacatggtgacatttcaCAGTAGTTGAcatcaaccaaatgtaaatataAACTAGACGTTGAAATTGTCTATGCCCAGTGGGAAGGTgatgaaagtgcacggtgatcttgatgctcctttccaataaatatcgagggtcttattctggtgacatgatcaacGCTTGACTGCCGtgcttgacaaataaaaatattcataatctcatcatgtagactaacCCTACCCGTACTGTATGTGAGCTGTTGGCTATAGCGCACATGCCACGACCAGAGTAGGCATATTTGCTATATAACGCAACTGTTTTTGTGACCAAACTATCGgtagttgaaaatgtgatgggaAAAGCATTGAACTTTATTCAGTACATGAAAACAAGTCAGTTTGGGGTAAACACTGGTTGGAAATACAAATATTTTATGGGGAttctagaatattcacatgaatcgccaattggatggaaacctagctattgacAAATGTTTTCTAATGACTGAGAACAGAGTTTATGAGAAGACAGTCAAGACACTTGCAGAAAGCAGCAGTGTTACTTTTGTCTTTCTATTCTGTAAAGTGAGAGCAGTGCGACCCTACCACAACTGTTACACTAGTGgtgctaatatactgtagggagggATCACAGCCTCCTGCTTGTAACCTTTTAAAAGGAACAATGATATCAAGAGCCGGATCGCCATCGTCTTTTTAGAACTTTGCCAGAGACTAAGaattctggagaaaaaaaacaacagtggACATGCTTTTACGAATAAACATGAGAATTCTCTCAAA

Function

NR:

description
zinc finger protein 473 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589070.2 True 2882 mRNA 0.42 2 10677802 10681747

Neighbor

gene id symbol gene type direction distance location
LOC110508501 LOC106600384 coding downstream 137457 10535026 ~ 10540345 (-)
LOC110508159 LOC106600382 coding downstream 169453 10504714 ~ 10508349 (-)
LOC110508497 LOC106600370 coding downstream 213972 10418527 ~ 10463830 (-)
LOC110508496 LOC106600349 coding downstream 263162 10387353 ~ 10414640 (-)
LOC110508492 LOC106600326 coding downstream 354718 10306711 ~ 10323084 (-)
LOC110508508 LOC106600390 coding upstream 7436 10689183 ~ 10692245 (-)
LOC110508519 LOC106600402 coding upstream 163468 10845215 ~ 10852874 (-)
LOC110508520 LOC106600403 coding upstream 187369 10869116 ~ 10884590 (-)
LOC110508522 NA coding upstream 204880 10886198 ~ 10894141 (-)
LOC110508523 LOC106600405 coding upstream 223780 10905527 ~ 10911512 (-)
G2103876 NA non-coding downstream 27799 10649682 ~ 10650003 (-)
G2103872 NA non-coding downstream 31687 10645683 ~ 10646115 (-)
G2103871 NA non-coding downstream 32581 10644942 ~ 10645221 (-)
G2103870 NA non-coding downstream 33250 10644219 ~ 10644552 (-)
G2103869 NA non-coding downstream 35687 10641904 ~ 10642115 (-)
G2103917 NA non-coding upstream 23706 10705453 ~ 10705659 (-)
G2103918 NA non-coding upstream 23979 10705726 ~ 10705929 (-)
G2103921 NA non-coding upstream 27085 10708832 ~ 10709173 (-)
G2103894 LOC106600393 non-coding upstream 38405 10720152 ~ 10757337 (-)
G2103897 LOC106600396 non-coding upstream 56200 10737947 ~ 10824356 (-)
G2103257 NA other downstream 471126 10206063 ~ 10206676 (-)
G2103203 LOC106600278 other downstream 562405 10113428 ~ 10115397 (-)
LOC110508476 LOC106600265 other downstream 669899 10004226 ~ 10007929 (-)
LOC110508473 LOC106600236 other downstream 865944 9739138 ~ 9883971 (-)
G2103015 NA other downstream 900894 9776619 ~ 9776908 (-)
G2103920 NA other upstream 26265 10708012 ~ 10708499 (-)
G2105419 LOC104953893 other upstream 817379 11499126 ~ 11500072 (-)
G2109663 LOC106599735 other upstream 4858021 15539768 ~ 15554897 (-)
G2109705 NA other upstream 4921938 15603685 ~ 15604463 (-)

Expression


Co-expression Network