rs15 (rig)


Basic Information

Item Value
gene id rs15
gene name rig
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30368374 ~ 30374247 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165174.2
CTTTTCACCGGAACATCAGGCAAAATGGCGGATGTCGAGATCAAGAAGAAGCGTACCTTCAGGAAGTTCACCTACAGAGGTGTGGACCTGGACCAGCTTCTGGACATGTCCTAtgaaCAGCTGATGCAGCTGTACTGCGCCCGCCAGAGGAGGAGACTTAACCGTGGCCTTCGCCGCAAGCAGCAGTCCCTCCTGAAGCGCCTGCGTAAGGCCAAGAAGGAGGCTCCCCCCATGGAGAAGCCCGAGGTGGTGAAGACTCACCTTAGGGACATGGTCATCCTGCCTGAGATGGTTGGCTCCATGGTCGGAGTGTACAACGGAAAGACCTTCAACCAGGTTGAAATCAAGCCTGAGATGTGCGGCCACTACCTGGGGGAGTTCTCTATCACCTACAAGCCAGTCAAGCACGGTCGCCCCGGTATCGGAGCTACGCATTCTTCCCGTTTCATCCCACTGAAATAGAAGGGCTGCTGTCTTTGTATAAATAAAAATGAGGTCCCCAC

Function

symbol description
rig Involved in flight behavior; molting cycle; and response to ecdysone. Located in cytoplasm and nucleus. Part of SMN complex and cytoplasmic U snRNP body. Is expressed in adult head; nurse cell; and oocyte. Orthologous to human GEMIN5 (gem nuclear organelle associated protein 5).

NR:

description
40S ribosomal protein S15

GO:

id name namespace
GO:0006412 translation biological_process
GO:0015935 small ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02958 RP-S15e, RPS15; small subunit ribosomal protein S15e

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165174.2 True 503 mRNA 0.54 4 30368374 30374247

Neighbor

gene id symbol gene type direction distance location
LOC110508914 LOC106598989 coding upstream 1707 30360185 ~ 30366667 (+)
LOC110508913 LOC106598990 coding upstream 14706 30347408 ~ 30353668 (+)
LOC110508911 LOC106598992 coding upstream 31435 30283920 ~ 30336939 (+)
LOC110508216 NA coding upstream 69151 30288254 ~ 30299223 (+)
LOC110508214 LOC106569003 coding upstream 102384 30264150 ~ 30265990 (+)
LOC110508915 LOC106598984 coding downstream 624 30374871 ~ 30395912 (+)
si:rp71-39b20.4 LOC106598976 coding downstream 87233 30461480 ~ 30466241 (+)
kcnn1a LOC106598974 coding downstream 160091 30534338 ~ 30592397 (+)
LOC110508922 ocel1 coding downstream 221682 30595929 ~ 30608022 (+)
zgc:154006 LOC106598968 coding downstream 234040 30608287 ~ 30629821 (+)
G2126561 NA non-coding upstream 55227 30312829 ~ 30313147 (+)
G2126559 NA non-coding upstream 58002 30310086 ~ 30310372 (+)
G2126488 NA non-coding upstream 69261 30284002 ~ 30299113 (+)
G2126538 NA non-coding upstream 112675 30255491 ~ 30255699 (+)
G2126510 NA non-coding upstream 131881 30228870 ~ 30236493 (+)
G2126585 NA non-coding downstream 26447 30400694 ~ 30410652 (+)
G2126610 NA non-coding downstream 65804 30440051 ~ 30441047 (+)
G2126608 NA non-coding downstream 67769 30442016 ~ 30447464 (+)
G2126629 NA non-coding downstream 105612 30479859 ~ 30484962 (+)
G2126641 NA non-coding downstream 128495 30502742 ~ 30502949 (+)
G2126497 NA other upstream 156741 30210247 ~ 30211633 (+)
G2125614 LOC106599059 other upstream 1044990 29320743 ~ 29323384 (+)
LOC110508880 NA other upstream 1093923 29270737 ~ 29274454 (+)
LOC110508851 LOC106599130 other upstream 1829962 28522217 ~ 28551515 (+)
LOC110508827 LOC106599210 other upstream 2644386 27720549 ~ 27725061 (+)
G2127299 LOC106598972 other downstream 266440 30640687 ~ 30641243 (+)
LOC110508221 LOC106598877 other downstream 1266055 31594783 ~ 31643462 (+)
G2128189 NA other downstream 1365065 31739312 ~ 31740070 (+)
G2128614 NA other downstream 1570917 31945164 ~ 31948898 (+)

Expression


Co-expression Network