LOC110508880


Basic Information

Item Value
gene id LOC110508880
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29270737 ~ 29274454 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589759.2
ATATAGCAAATATACATTGCACGTTCGAAATGCGGTCTTCCTGTGTGGGCGGGCTTAAGACTTTGCATACGTAGACATTTGCCCTGCTTTTATTCTCCCTTTTGAAACATTTTGTACTGTAGAGTAGACGAGTGCCAACTGCATACCAGTGAGCCAGATTAACCATATAACTAACATTCCACATTTTTGTAAAATAATTCATAACCTACTTATTTGGAAGATGGTCGCCAAACAGAGGATTCGTATGGCCAACGAAAAACACAGCAAGAATATCACGCAAAGAGGCAACGTAGCCAAATCTACGAGAAACCCTCAAGATGATAAGGTGGCTGTGGGACCATGGCTGTTGGCCCTCTTCATCTTTGTTGTGTGTGGATCAGctatCTTCCAGATCATTCAGAGCATTCGGATGGGCATGTAGGATGAAATGTCCACCCCGTTCATTCCACTCAGTATCCGCCCAACCAAGTACCACCTCTCTCAGCTTGATGACGTCCCATTATCCTTCACTCAACATTCTCAGTCTTCTTAAGTTGCACACAGCTAGGCCAAGGACGATGAGCCACTGTCTTGCACTTTGTGACTTTCTGTTCttaatttgtattattttgttCGACCTTTGTTATTTGTCTCTGGTTACTTTTGGCAAGCTCTGTCAAGTCATTCCTACCTTGTGCCTTAAATGATAGAGGTTAACAATTTTCAGCACACAACAAAAAGCCATCAAGCTGCATTCCAATAGTGGGGTTTCTGAAATAATAAGGTGATGTGCTCTGTCAATCTCAGGCAAGTTGGCCATCTTGTGGAATTGTGAGCTCTGTTTTTGGTGGTCCTTTCTAGAAGTCTTATTTGCCACCACTTTGTTGTAATTTCAGTGTGTAAAATGAACTATAATTTCTACTTTAATTTAGTGTATTGAAAGAAATGTTCTGTTTTGCTTTGAACATGTTTTCTGTTTGGTAGAATGGCCAAATGCCTTGGTCAGACTGGAAAGAAATTCAGCAACACAAATCTTAGCACAAGATTTGAAGCTGGATATAATACTCATGCCAAAAGAACAACTAAATGGTAGAaaccagagccatgtatttagaaAGTTAGGACATTGAAGTTATGgcattatgatgcatttacatgacaCCTTATAATCAAAGAGTTCCTGATTGTCTATAATTAAAAAACTTGTCTTACAAATGGAATGCTCAAAGCCGTTGGTTTAAGAAGTTGGGCAAACTATATGGTTTTGGTAGAAATTAGTGGTACGTAATGATAAGCAGTCCTATTGTTTTTTGCGGTCTAGTCCTCATctactttttaaatattttgtatcTATTGATTGGCCCTGCCTATTCTTGCGGCTTTGGGATTGTCAACTGATCCACAGTCAGTTGAATATGGATCAGTAAAAGTAAGATAAGGACATCTTCAAGCTTTGGTAGTTGATCTGACGTCCTGTCCTCATGTTTACGGAAACAGTTCAAGGCTCAAGATTACTGGATAAAATGTCATTATCTTCACTAAACCAGTGTTTAGAAGTAAATATTAAGGGCTGGATGAAAATGTCAACCTGGTTATTTTACTGTGCATAAAGTATGCTGGCAATGTAAGAGCGAAATTAATAAAATATGATAATTGGTACATTA
>TU2430303
GCGGGCTTAAGACTTTGCATACGTAGACATTTGCCCTGCTTTTATTCTCCCTTTTGAAACATTTTGTACTGTAGAGTAGACGAGTGCCAACTGCATACCAGTGAGCCAGATTAACCATATAACTAACATTCCACATTTTTGTAAAATAATTCATAACCTACTTATTTGGAAGATGGTCGCCAAACAGAGGATTCGTATGGCCAACGAAAAACACAGCAAGAATATCACGCAAAGAGGCAACGTAGCCAAATCTACGAGAAACCCTCAAGATGATAAGGTGGCTGTGGGACCATGGCTGTTGGCCCTCTTCATCTTTGTTGTGTGTGGATCAGctatCTTCCAGATCATTCAGAGCATTCGGATGGGCATGTAGGATGAAATGTCCACCCCGTTCATTCCACTCAGTATCCGCCCAACCAAGTACCACCTCTCTCAGCTTGATGACGTCCCATTATCCTTCACTCAACATTCTCAGTCTTCTTAAGTTGCACACAGCTAGGCCAAGGACGATGAGCCACTGTCTTGCACTTTGTGACTTTCTGTTCttaatttgtattattttgttCGACCTTTGTTATTTGTCTCTGGTTACTTTTGGCAAGCTCTGTCAAGTCATTCCTACCTTGTGCCTTAAATGATAGAGGTTAACAATTTTCAGCACACAACAAAAAGCCATCAAGCTGCATTCCAATAGTGGGGTTTCTGAAATAATAAGGTGATGTGCTCTGTCAATCTCAGGCAAGTTGGCCATCTTGTGGAATTGTGAGCTCTGTTTTTGGTGGTCCTTTCTAGAAGTCTTATTTGCCACCACTTTGTTGTAATTTCAGTGTGTAAAATGAACTATAATTTCTACTTTAATTTAGTGTATTGAAAGAAATGTTCTGTTTTGCTTTGAACATGTTTTCTGTTTGGTAGAATGGCCAAATGCCTTGGTCAGACTGGAAAGAAATTCAGCAACACAAATCTTAGCACAAGATTTGAAGCTGGATATAATACTCATGCCAAAAGAACAACTAAATGGTAGAaaccagagccatgtatttagaaAGTTAGGACATTGAAGTTATGgcattatgatgcatttacatgacaCCTTATAATCAAAGAGTTCCTGATTGTCTATAATTAAAAAACTTGTCTTACAAATGGAATGCTCAAAGCCGTTGGTTTAAGAAGTTGGGCAAACTATATGGTTTTGGTAGAAATTAGTGGTACGTAATGATAAGCAGTCCTATTGTTTTTTGCGGTCTAGTCCTCATctactttttaaatattttgtatcTATTGATTGGCCCTGCCTATTCTTGCGGCTTTGGGATTGTCAACTGATCCACAGTCAGTTGAATATGGATCAGTAAAAGTAAGATAAGGACATCTTCAAGCTTTGGTAGTTGATCTGACGTCCTGTCCTCATGTTTACGGAAACAGTTCAAGGCTCAAGATTACTGGATAAAATGTCATTATCTTCACTAAACCAGTGTTTAGAAGTAAATATTAAGGGCTGGATGAAAATGTCAACCTGGTTATTTTACTGTGCATAAAGTATGCTGGCAATGTAAGAGCGAAATTAATAAAATATGATAATTGGTACA

Function

NR:

description
PREDICTED: stress-associated endoplasmic reticulum protein 1

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589759.2 False 1643 mRNA 0.39 3 29270737 29274454
TU2430303 True 1592 TUCP 0.39 3 29270785 29274451

Neighbor

gene id symbol gene type direction distance location
LOC110508878 LOC106599189 coding upstream 14781 29246463 ~ 29255956 (+)
LOC118944852 NA coding upstream 38024 29228845 ~ 29233301 (+)
LOC110508872 LOC106599074 coding upstream 91840 29176760 ~ 29178897 (+)
LOC110508871 ppm1l coding upstream 98703 29142988 ~ 29172034 (+)
LOC110508870 LOC106599084 coding upstream 164968 29096684 ~ 29105769 (+)
LOC110508882 LOC106599064 coding downstream 1952 29276406 ~ 29283154 (+)
LOC110508889 LOC106599045 coding downstream 135868 29410322 ~ 29661754 (+)
LOC110508893 marh2 coding downstream 599035 29873489 ~ 29877319 (+)
LOC110508895 LOC106599036 coding downstream 613549 29888003 ~ 29893380 (+)
LOC110508896 NA coding downstream 629886 29904340 ~ 29906026 (+)
G2125560 LOC106599070 non-coding upstream 1313 29265047 ~ 29269424 (+)
G2125513 NA non-coding upstream 32317 29233625 ~ 29238420 (+)
G2125548 NA non-coding upstream 103849 29166357 ~ 29166888 (+)
G2125510 NA non-coding upstream 144974 29119231 ~ 29125763 (+)
G2125595 NA non-coding downstream 21138 29295592 ~ 29295808 (+)
G2125596 LOC106599063 non-coding downstream 25979 29300433 ~ 29301842 (+)
G2125615 NA non-coding downstream 49244 29323698 ~ 29324403 (+)
G2125617 NA non-coding downstream 50757 29325211 ~ 29325896 (+)
G2125621 NA non-coding downstream 51855 29326309 ~ 29326657 (+)
LOC110508851 LOC106599130 other upstream 732325 28522217 ~ 28551515 (+)
LOC110508827 LOC106599210 other upstream 1546749 27720549 ~ 27725061 (+)
G2123170 NA other upstream 2161455 27106034 ~ 27109282 (+)
G2123174 NA other upstream 2166467 27101312 ~ 27104270 (+)
G2123101 NA other upstream 2325550 26942200 ~ 26945187 (+)
G2125614 LOC106599059 other downstream 46289 29320743 ~ 29323384 (+)
G2126497 NA other downstream 935793 30210247 ~ 30211633 (+)
kcnn1a LOC106598974 other downstream 1260397 30534338 ~ 30592397 (+)
G2127299 LOC106598972 other downstream 1366233 30640687 ~ 30641243 (+)
LOC110508221 LOC106598877 other downstream 2365848 31594783 ~ 31643462 (+)

Expression


Co-expression Network