LOC110508872 (LOC106599074)


Basic Information

Item Value
gene id LOC110508872
gene name LOC106599074
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29176760 ~ 29178897 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966793.1
aatgtgtgACAAAAATAAGCAGTGTGGAACACCACTGCCCCAAATGCACTGCTCCAATAACTTTCAAAATATTTTTCCTAAGTTTGCCCCTAAAATTTTTTCCTATGAATGAAGTCGAAAAATGTATCTTTTGCTACGAATTAAgtcacacatttttttttgtattttcacaCTAATTATTAagccacacaaaaacacacaaaatttgctgaaatactttttgtacatatttgcaCTAATTGAGTGTAAGATTGTGTTGCAACTGAATATGACCAGTTAGTTTAAATGTAATACTAGGCCTGAAGGCTACAGGCAGCAACTGAGAACCAAGCAAAAATGTgttatttctttatttctctctctttcatctaaaCACCTTTGGAATTGTTCTCCATTGTTTGATATGTAACTATAATGTAAGTTATATTGCCTGCCTGATGGTTTTAATGAGATTTAAGGTATCTGTATCTGTCAGATTGAAGTGGAAAATGCAATATATTCTATATGGTGTCCTAATGGCCCATATATTATTTTAGCTATAGGCTAGGCTACACATGACATAACCAATGGTTGCCATGGCCTTAAGTACATCTGAATGACATAATGATATACTGTTATCTGATGATATAGAGGGTGCGTGCGTTCGTCTCCATGCGTACACTTTGTTCAACTTAACGTAAAGGTCAGACCATTCGAGGTGACGCTTCAATGTGTCTTTAGAGCAGGTTAAATACCATTCACATGGAGGATTTTACCATGTGAAGTGTGATAAAAACATTAGGCTATCAAATCTGCGCATGTGTCAcattgttgtattgtttgtgtcAACAGCGCACTGATTTGAGTCACGCTAGACTGGCTCATTTGGTGGATAAGTTCCTAACCAAACAACAGTCATATCTTGCTTCATATAGGACCTACTTTGACCCTTGCTTATCGGTGAACGAAAGGTTTATAGGTAGCATGTAATCGCTTACCTGGTAACAGAAAGGCAACGCACTGGGTAAACACCGCAGCTCGAGGCAGAGAACAGTGATATCACTGCCTCTCCCTGATTTGCGTCTTTGCCAAGTAGTCGGCTTACGCTTTACCACACATGGGACAGCGGGGATCGAGACCCCAACCCGAGGCCCGAGTTCTCCTATTGGGTCTCGACTCAGCGGGGAAATCAACCCTTCTTTACAAACTGAAATATAACGAATCGGTCAATACCGTTCCCACCATCGGTTTCAATGTGGAGATGATAGAAGCCAAGAAGAAGAGGGAGACAGTTGCTCTGACCGTGTGGGACGTGGGCGGCCAGAATACAATGAGGCACTACTGGAAGAGCTTCTATCAGGACACTGCTGGACTGGTGTTCGTGGTGGACAGCTCAGACAGGCGCCGGTTGGACGAGGCCCGGCGGGAACTAGATCACGCCCTGAGGAGTGAATTCTTACGGGGTCTGCCTGTGGTCATCCTCGCCAACAAGCAGGACCTTCCCGAGGCCGTATCCGTCACGGAGATAACGGAGCGCTTTCACCTGAGGACGATGAGCGTTGAGCGGGACTGGTTCGTTCAGCCCTGCTCTGCCGTGACCGGTGCTGGGCTTATAGAGGGCTTCCAAAAGGTGGCACACCTGCTCAAACTACCATCAGAGGACGTTCAAGACAATATTAAAGAGACAGTGCAGTATCTACGATCAAAATCAGTCACGTCAATGGGTTTGTAATGTTTGCAATGATAGGATATGTCAAAAGTTATTGACAAATGATGATAATTTGTTTTTATTGTTTACGGATGAATATCACATTTCACTATGATCAATGTGTTTCTTGAAAAGGTTGTCACAGTGCAATAGACTACATGGAAACGAAATCAATCCACGAAGCTATTCAATTGACTTTAAATCAGCCTATGACATTTTTTCCAAATAAGTTTAATACGTTTGTATCAGATTATTTCCTCTGAGAAATATGGTCATACATAATGTTAAGTCGCATATAGACCTAATaattaacatgtcattatggacTTTGGGGAGCAATGCGTAAAAACGCACCCCAAATGGTCAAATTCACTTTTCATCTTTTATGTAGACCTATAACCTAATATATATGTCTTGTATCTAATAAAATGTCTTCCCTACATGCTATATC

Function

NR:

description
ADP-ribosylation factor-like protein 14

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K17200 ARL14, ARF7; ADP-ribosylation factor-like protein 14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966793.1 True 2138 mRNA 0.41 1 29176760 29178897

Neighbor

gene id symbol gene type direction distance location
LOC110508871 ppm1l coding upstream 4726 29142988 ~ 29172034 (+)
LOC110508870 LOC106599084 coding upstream 70991 29096684 ~ 29105769 (+)
si:ch211-13f8.1 LOC106599085 coding upstream 83350 29073723 ~ 29093410 (+)
LOC110508213 LOC106568921 coding upstream 139425 29036701 ~ 29037335 (+)
LOC110508211 LOC106599090 coding upstream 194427 28972133 ~ 28982333 (+)
LOC118944852 NA coding downstream 53404 29228845 ~ 29233301 (+)
LOC110508878 LOC106599189 coding downstream 67566 29246463 ~ 29255956 (+)
LOC110508880 NA coding downstream 91840 29270737 ~ 29274454 (+)
LOC110508882 LOC106599064 coding downstream 97509 29276406 ~ 29283154 (+)
LOC110508889 LOC106599045 coding downstream 231425 29410322 ~ 29661754 (+)
G2125548 NA non-coding upstream 9872 29166357 ~ 29166888 (+)
G2125510 NA non-coding upstream 50997 29119231 ~ 29125763 (+)
G2125473 LOC106599198 non-coding upstream 149668 29026786 ~ 29027092 (+)
G2125472 LOC106599198 non-coding upstream 150472 29025989 ~ 29026288 (+)
G2125414 NA non-coding upstream 228534 28906473 ~ 28948226 (+)
G2125513 NA non-coding downstream 54728 29233625 ~ 29238420 (+)
G2125560 LOC106599070 non-coding downstream 86150 29265047 ~ 29269424 (+)
G2125595 NA non-coding downstream 116695 29295592 ~ 29295808 (+)
G2125596 LOC106599063 non-coding downstream 121536 29300433 ~ 29301842 (+)
LOC110508851 LOC106599130 other upstream 638348 28522217 ~ 28551515 (+)
LOC110508827 LOC106599210 other upstream 1452772 27720549 ~ 27725061 (+)
G2123170 NA other upstream 2067478 27106034 ~ 27109282 (+)
G2123174 NA other upstream 2072490 27101312 ~ 27104270 (+)
G2123101 NA other upstream 2231573 26942200 ~ 26945187 (+)
G2125614 LOC106599059 other downstream 141846 29320743 ~ 29323384 (+)
G2126497 NA other downstream 1031350 30210247 ~ 30211633 (+)
kcnn1a LOC106598974 other downstream 1355954 30534338 ~ 30592397 (+)
G2127299 LOC106598972 other downstream 1461790 30640687 ~ 30641243 (+)

Expression


Co-expression Network