LOC110508871 (ppm1l)


Basic Information

Item Value
gene id LOC110508871
gene name ppm1l
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29142988 ~ 29172034 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589741.2
TGTTGTTGACGCGGGTGAGTAGAGGCTGAATGGGAGCGTTTCCCACACAAGAAACGGGGTCACCGCAAAAACAGGCCACCGAAACTGAAACCCCTACTCCGCCCCTGGTGACAACTCCTCCTCACATTCCGGTGGGTCGTCTCCCGTTATTCGCGAAGCCTACAATGGGCTACAGACTACAGCGACTTCATTACGAGTTTTTTCGGCGAATCCTCGTGCTTCAGCTGTTATTTCGCGAGCCAGGACAGTCTCACTTGTCTTTCAAGCCCGCTTTCGTCATTCGCTCTTGCTCTTCAGTGTTACATTCCGTTGAGCGTTAAGGCTGGAAATAGCCTGCATTGACAATTTAAAGCCAGTTTGATATATTTATAGCAGTTCTGACATCAAACATTGATGGTGGACGTTTTTTATTTTTCCCTTGAACGGATATAATGGAGTGAATTGACCTGCACGAGAGAGGCAACCGTCAACAGTTTTCTTGCGTGTGATGATAGGAGACACAATGACGCTGTTGTCTCTTCTGGGTCGGATCATGCGTTATTTCCTCCTCAGGCCAGAGACATTGTTTCTGCTATGCATTAGCTTGGCCTTATGGAGTTACTTCTTCCACACGGACGAGGTGAAGACCATCGTCAAGTCCAGCCGGGATGCCGTGAACATGGTGAAGGGGAAAGTGGCGGAGATGATGCAAAACGACAGGTTGGGGGGGCTGAATGTCCTAGATGCGGAGTTCTCCAAAACTTGGGACTTCAAAAACAACAATGTAGCAGTGTACTCCATTCAGGGGCGGCGCGACCACATGGAGGACCGATTCGAGGTGCTCACCGACATCACCAACAAGAGTCACCCGTCTATATTCGGGATATTTGACGGTCACGGTGGTGAGgCTGCAGCGGACTATGTAAAGGCCCACCTTCCGGAGGCTCTGAGGCAGCAGTTGCTGTCctatgagagggagaagagggagagcgtTCCTTCCTACCCCAGCATCCTGGAGCAGCGTATCCTGGCTGTAGACCGAGACATGGTGGACAAGCTCTCCGCCAATCACGACGAAGCAGgtaCTACATGTCTGGTGGCCCTGCTATCGGACAGGGAGCTGACGGTGGCCAACGTTGGGGACTCACGAGGCGTGTTGTGTGACAAGGACGGAAACGCTGTGGCATTGTCACATGACCACAAGCCATACCAGCTGAAGGAGCGCAAGAGGATCAAGAGGGCAGGGGGCTTCATCAGCTTCAACGGCTCATGGCGCGTCCAGGGCATCCTGGCCATGTCTCGCTCGCTGGGCGATTACCCCCTAAAGAACCTCAATGTGGTCATCCCCGACCCCGACGTgttgacctttgacctggacaAGCTGCAGCCCGAGTTCATGATCCTGGCGTCGGACGGGCTGTGGGACGCCTTCAGCAACGAGGAGGCTGTGCGTTTCGTGCGCGAGCGCCTGGACGAGCCGCACTACGGTGCCAAGAGCATCGTGCTGCAGTCTTTCTACCGCGGCTGCCCCGACAACATCACCGTCATGGTGGTCAAGTTCAAGAGCGGCCCCGTGGGGAGCAAGGCTGAGGAGTAGAGGCGGTGATGTCACAAGTTTGTGATGGGGTTATTATGTTATAGATAGACTCTCCTCCCGTATGGATAGTGCAGCAAGCAATCAATGGGGAGGATTGGGAACTGTTGCAACATGCATACCTGGCATTCTCTTTGAAACTCATGTATAACCACACCAACACCAACATCCTAAACtatgtagtttatttttcatTTCTGACTATGACTTTTGGATAGAGAAGTATTTTTGCTTGAATTATGGCCTTAACTCGGAAGCTGGAGTGCTTGATCATcttgacacactcacacatacacacgtccATCTGCCGTCTCACACATTGGCATTCAGCACGAACACACAACTGGAGATCACCTCTTCTTCATCACTGAGATGACTCTCTGACTCAAACAGTAAAGCAAACTGATCTAGTGTTCTCTGCACGCCCTGCTGCAGTGTGTTGTACTGTCACAGGACTGATACTGTCCTAAAGAAAACTGTAAAAGAATAAGCACCTGTTGAGACTTTTCATTTTGGTGGAATGATAAGCCCTTACGTATCGGCCCATAAAAATGTTCTTGGTCATATACAGGATCAGTTATACCCTGATCTAGTTCCAGCCATTGCCTTTTTCGTCAACATAGTCTTAACAGGGCTGATGTTAAGTTACTGTATTATGGTACTGGACCTGTATAGGACATTTGTTTAGCCTATCCGTGTTTAGGAAAGATCTGTGGATTTTAGCACTCAGGTGTTGATGCCTTCGATCATGGGAATCGTACAGACTGGGAGGTGCATCTCAGACTGCTTATTAAAGCACCGTTACCCATGGCGACTGAGTTAAAGGCTACACAGCTGAAACAGGAAGGCTAATTGACAGTAATATGGCCACCCGTGTGTTAATTTTACAAGTGTGCTACTGTATTGAATACTACTATTATGACTGTATTTCCAACAATTTCTCACAGGCTCACCTCAGAATTTGACGTTCATTcatgtttctcaaacatcaaatttcgaagttgttccaaacatcaaatttcaaagtgtttaacgTTTTTTTAACTAGACATTTTTTAGGTTAGGGTAATGTTTAGGCATTAATTCAGAATTATTACGGTTATACATGAACCTTTCAGAatgaaggtttgggataggcttaaaaccaaaatataaaaactgctttctatcgctggatttgAATATGCAACTTTTGGAACCAAATGCAGATGTTTACACCCAACCGCCATCCCCTTTCACAACGTCCTAGCAAAACCCAAACCTACTGGAAGGGAACAGCACTGACTGTTGTCCTTAGTGGCTAGTTTCCTCTTTTATCTCCCGgagtcctcagacatggatggacattgaatactgacttgtataaGGGGTGACCTGCCTGGTATTTATTTCATAGGTACataattttaatttaaaaaatatatatgttatattatcatatACACCGAATAGGTGTTGTTTATAGGGTTAACCATAGTACGGTGCCCTTGTAGCaaattaaggttaagtgccttgcgcaAGGGTATATCGACAGatgttttattttgtctggtcgggtattcaaaccagcaacctttcagttactagcacAACGCTCTAACAGGTAGGTTATCTGCTGCCCTATGATGTGGCAAACCGTTTATCATTTAACAATGTACCTTAATTGCCTTATTTTTTCAGTTTTAATCTTGTCAAAACAAAACATACACCGATGTTTATTGTTCACCTCTGCATACAGTATGCATACGTTGATAATGCAACAAGCATCACTTGTAGACAGTTCACCAACAAGTCACTCATATAATCTGCCAAACACAAAATGTATGAATTTTCTGAATGCAGTCTGTCAGTATTAAAATCCAATGCTACCATGTCAAA
>XM_036966606.1
GGTGCTCACCGACATCACCAACAAGAGTCACCCGTCTATATTCGGGATATTTGACGGTCACGGTGGTGAGaaatgtttggtgatcgactaggagtGGCTTggagatcgaccggttggtgaccactgtaaCAGgCTGCAGCGGACTATGTAAAGGCCCACCTTCCGGAGGCTCTGAGGCAGCAGTTGCTGTCctatgagagggagaagagggagagcgtTCCTTCCTACCCCAGCATCCTGGAGCAGCGTATCCTGGCTGTAGACCGAGACATGGTGGACAAGCTCTCCGCCAATCACGACGAAGCAGgtaCTACATGTCTGGTGGCCCTGCTATCGGACAGGGAGCTGACGGTGGCCAACGTTGGGGACTCACGAGGCGTGTTGTGTGACAAGGACGGAAACGCTGTGGCATTGTCACATGACCACAAGCCATACCAGCTGAAGGAGCGCAAGAGGATCAAGAGGGCAGGGGGCTTCATCAGCTTCAACGGCTCATGGCGCGTCCAGGGCATCCTGGCCATGTCTCGCTCGCTGGGCGATTACCCCCTAAAGAACCTCAATGTGGTCATCCCCGACCCCGACGTgttgacctttgacctggacaAGCTGCAGCCCGAGTTCATGATCCTGGCGTCGGACGGGCTGTGGGACGCCTTCAGCAACGAGGAGGCTGTGCGTTTCGTGCGCGAGCGCCTGGACGAGCCGCACTACGGTGCCAAGAGCATCGTGCTGCAGTCTTTCTACCGCGGCTGCCCCGACAACATCACCGTCATGGTGGTCAAGTTCAAGAGCGGCCCCGTGGGGAGCAAGGCTGAGGAGTAGAGGCGGTGATGTCACAAGTTTGTGATGGGGTTATTATGTTATAGATAGACTCTCCTCCCGTATGGATAGTGCAGCAAGCAATCAATGGGGAGGATTGGGAACTGTTGCAACATGCATACCTGGCATTCTCTTTGAAACTCATGTATAACCACACCAACACCAACATCCTAAACtatgtagtttatttttcatTTCTGACTATGACTTTTGGATAGAGAAGTATTTTTGCTTGAATTATGGCCTTAACTCGGAAGCTGGAGTGCTTGATCATcttgacacactcacacatacacacgtccATCTGCCGTCTCACACATTGGCATTCAGCACGAACACACAACTGGAGATCACCTCTTCTTCATCACTGAGATGACTCTCTGACTCAAACAGTAAAGCAAACTGATCTAGTGTTCTCTGCACGCCCTGCTGCAGTGTGTTGTACTGTCACAGGACTGATACTGTCCTAAAGAAAACTGTAAAAGAATAAGCACCTGTTGAGACTTTTCATTTTGGTGGAATGATAAGCCCTTACGTATCGGCCCATAAAAATGTTCTTGGTCATATACAGGATCAGTTATACCCTGATCTAGTTCCAGCCATTGCCTTTTTCGTCAACATAGTCTTAACAGGGCTGATGTTAAGTTACTGTATTATGGTACTGGACCTGTATAGGACATTTGTTTAGCCTATCCGTGTTTAGGAAAGATCTGTGGATTTTAGCACTCAGGTGTTGATGCCTTCGATCATGGGAATCGTACAGACTGGGAGGTGCATCTCAGACTGCTTATTAAAGCACCGTTACCCATGGCGACTGAGTTAAAGGCTACACAGCTGAAACAGGAAGGCTAATTGACAGTAATATGGCCACCCGTGTGTTAATTTTACAAGTGTGCTACTGTATTGAATACTACTATTATGACTGTATTTCCAACAATTTCTCACAGGCTCACCTCAGAATTTGACGTTCATTcatgtttctcaaacatcaaatttcgaagttgttccaaacatcaaatttcaaagtgtttaacgTTTTTTTAACTAGACATTTTTTAGGTTAGGGTAATGTTTAGGCATTAATTCAGAATTATTACGGTTATACATGAACCTTTCAGAatgaaggtttgggataggcttaaaaccaaaatataaaaactgctttctatcgctggatttgAATATGCAACTTTTGGAACCAAATGCAGATGTTTACACCCAACCGCCATCCCCTTTCACAACGTCCTAGCAAAACCCAAACCTACTGGAAGGGAACAGCACTGACTGTTGTCCTTAGTGGCTAGTTTCCTCTTTTATCTCCCGgagtcctcagacatggatggacattgaatactgacttgtataaGGGGTGACCTGCCTGGTATTTATTTCATAGGTACataattttaatttaaaaaatatatatgttatattatcatatACACCGAATAGGTGTTGTTTATAGGGTTAACCATAGTACGGTGCCCTTGTAGCaaattaaggttaagtgccttgcgcaAGGGTATATCGACAGatgttttattttgtctggtcgggtattcaaaccagcaacctttcagttactagcacAACGCTCTAACAGGTAGGTTATCTGCTGCCCTATGATGTGGCAAACCGTTTATCATTTAACAATGTACCTTAATTGCCTTATTTTTTCAGTTTTAATCTTGTCAAAACAAAACATACACCGATGTTTATTGTTCACCTCTGCATACAGTATGCATACGTTGATAATGCAACAAGCATCACTTGTAGACAGTTCACCAACAAGTCACTCATATAATCTGCCAAACACAAAATGTATGAATTTTCTGAATGCAGTCTGTCAGTATTAAAATCCAATGCTACCATGTCAAA

Function

symbol description
ppm1l Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in protein dephosphorylation. Predicted to act upstream of or within MAPK cascade and transmembrane receptor protein serine/threonine kinase signaling pathway. Located in extracellular exosome.

NR:

description
phosphatase 1L

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K17506 PPM1L, PP2CE; protein phosphatase 1L

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589741.2 False 3451 mRNA 0.46 4 29142988 29172034
XM_036966606.1 True 2697 mRNA 0.45 5 29143804 29172034

Neighbor

gene id symbol gene type direction distance location
LOC110508870 LOC106599084 coding upstream 37219 29096684 ~ 29105769 (+)
si:ch211-13f8.1 LOC106599085 coding upstream 49578 29073723 ~ 29093410 (+)
LOC110508213 LOC106568921 coding upstream 105653 29036701 ~ 29037335 (+)
LOC110508211 LOC106599090 coding upstream 160655 28972133 ~ 28982333 (+)
LOC110508866 LOC106599093 coding upstream 188239 28952220 ~ 28954749 (+)
LOC110508872 LOC106599074 coding downstream 4726 29176760 ~ 29178897 (+)
LOC118944852 NA coding downstream 60267 29228845 ~ 29233301 (+)
LOC110508878 LOC106599189 coding downstream 74429 29246463 ~ 29255956 (+)
LOC110508880 NA coding downstream 98703 29270737 ~ 29274454 (+)
LOC110508882 LOC106599064 coding downstream 104372 29276406 ~ 29283154 (+)
G2125510 NA non-coding upstream 17225 29119231 ~ 29125763 (+)
G2125473 LOC106599198 non-coding upstream 115896 29026786 ~ 29027092 (+)
G2125472 LOC106599198 non-coding upstream 116700 29025989 ~ 29026288 (+)
G2125414 NA non-coding upstream 194762 28906473 ~ 28948226 (+)
LOC110508865 LOC106599096 non-coding upstream 195989 28915942 ~ 28946999 (+)
G2125513 NA non-coding downstream 61591 29233625 ~ 29238420 (+)
G2125560 LOC106599070 non-coding downstream 93013 29265047 ~ 29269424 (+)
G2125595 NA non-coding downstream 123558 29295592 ~ 29295808 (+)
G2125596 LOC106599063 non-coding downstream 128399 29300433 ~ 29301842 (+)
LOC110508851 LOC106599130 other upstream 604576 28522217 ~ 28551515 (+)
LOC110508827 LOC106599210 other upstream 1419000 27720549 ~ 27725061 (+)
G2123170 NA other upstream 2033706 27106034 ~ 27109282 (+)
G2123174 NA other upstream 2038718 27101312 ~ 27104270 (+)
G2123101 NA other upstream 2197801 26942200 ~ 26945187 (+)
G2125614 LOC106599059 other downstream 148709 29320743 ~ 29323384 (+)
G2126497 NA other downstream 1038213 30210247 ~ 30211633 (+)
kcnn1a LOC106598974 other downstream 1362817 30534338 ~ 30592397 (+)
G2127299 LOC106598972 other downstream 1468653 30640687 ~ 30641243 (+)

Expression


Co-expression Network