RNA id: XM_036966793.1


Basic Information

Item Value
RNA id XM_036966793.1
length 2138
RNA type mRNA
GC content 0.41
exon number 1
gene id LOC110508872
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29176760 ~ 29178897 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatgtgtgACAAAAATAAGCAGTGTGGAACACCACTGCCCCAAATGCACTGCTCCAATAACTTTCAAAATATTTTTCCTAAGTTTGCCCCTAAAATTTTTTCCTATGAATGAAGTCGAAAAATGTATCTTTTGCTACGAATTAAgtcacacatttttttttgtattttcacaCTAATTATTAagccacacaaaaacacacaaaatttgctgaaatactttttgtacatatttgcaCTAATTGAGTGTAAGATTGTGTTGCAACTGAATATGACCAGTTAGTTTAAATGTAATACTAGGCCTGAAGGCTACAGGCAGCAACTGAGAACCAAGCAAAAATGTgttatttctttatttctctctctttcatctaaaCACCTTTGGAATTGTTCTCCATTGTTTGATATGTAACTATAATGTAAGTTATATTGCCTGCCTGATGGTTTTAATGAGATTTAAGGTATCTGTATCTGTCAGATTGAAGTGGAAAATGCAATATATTCTATATGGTGTCCTAATGGCCCATATATTATTTTAGCTATAGGCTAGGCTACACATGACATAACCAATGGTTGCCATGGCCTTAAGTACATCTGAATGACATAATGATATACTGTTATCTGATGATATAGAGGGTGCGTGCGTTCGTCTCCATGCGTACACTTTGTTCAACTTAACGTAAAGGTCAGACCATTCGAGGTGACGCTTCAATGTGTCTTTAGAGCAGGTTAAATACCATTCACATGGAGGATTTTACCATGTGAAGTGTGATAAAAACATTAGGCTATCAAATCTGCGCATGTGTCAcattgttgtattgtttgtgtcAACAGCGCACTGATTTGAGTCACGCTAGACTGGCTCATTTGGTGGATAAGTTCCTAACCAAACAACAGTCATATCTTGCTTCATATAGGACCTACTTTGACCCTTGCTTATCGGTGAACGAAAGGTTTATAGGTAGCATGTAATCGCTTACCTGGTAACAGAAAGGCAACGCACTGGGTAAACACCGCAGCTCGAGGCAGAGAACAGTGATATCACTGCCTCTCCCTGATTTGCGTCTTTGCCAAGTAGTCGGCTTACGCTTTACCACACATGGGACAGCGGGGATCGAGACCCCAACCCGAGGCCCGAGTTCTCCTATTGGGTCTCGACTCAGCGGGGAAATCAACCCTTCTTTACAAACTGAAATATAACGAATCGGTCAATACCGTTCCCACCATCGGTTTCAATGTGGAGATGATAGAAGCCAAGAAGAAGAGGGAGACAGTTGCTCTGACCGTGTGGGACGTGGGCGGCCAGAATACAATGAGGCACTACTGGAAGAGCTTCTATCAGGACACTGCTGGACTGGTGTTCGTGGTGGACAGCTCAGACAGGCGCCGGTTGGACGAGGCCCGGCGGGAACTAGATCACGCCCTGAGGAGTGAATTCTTACGGGGTCTGCCTGTGGTCATCCTCGCCAACAAGCAGGACCTTCCCGAGGCCGTATCCGTCACGGAGATAACGGAGCGCTTTCACCTGAGGACGATGAGCGTTGAGCGGGACTGGTTCGTTCAGCCCTGCTCTGCCGTGACCGGTGCTGGGCTTATAGAGGGCTTCCAAAAGGTGGCACACCTGCTCAAACTACCATCAGAGGACGTTCAAGACAATATTAAAGAGACAGTGCAGTATCTACGATCAAAATCAGTCACGTCAATGGGTTTGTAATGTTTGCAATGATAGGATATGTCAAAAGTTATTGACAAATGATGATAATTTGTTTTTATTGTTTACGGATGAATATCACATTTCACTATGATCAATGTGTTTCTTGAAAAGGTTGTCACAGTGCAATAGACTACATGGAAACGAAATCAATCCACGAAGCTATTCAATTGACTTTAAATCAGCCTATGACATTTTTTCCAAATAAGTTTAATACGTTTGTATCAGATTATTTCCTCTGAGAAATATGGTCATACATAATGTTAAGTCGCATATAGACCTAATaattaacatgtcattatggacTTTGGGGAGCAATGCGTAAAAACGCACCCCAAATGGTCAAATTCACTTTTCATCTTTTATGTAGACCTATAACCTAATATATATGTCTTGTATCTAATAAAATGTCTTCCCTACATGCTATATC

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K17200 ARL14, ARF7; ADP-ribosylation factor-like protein 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2430259 lncRNA upstream 9872 29166357 ~ 29166888 (+) True G2125548
TU2430218 lncRNA upstream 50997 29119231 ~ 29125763 (+) False G2125510
TU2430220 lncRNA upstream 52967 29119231 ~ 29123793 (+) True G2125510
TU2430175 lncRNA upstream 149668 29026786 ~ 29027092 (+) True G2125473
TU2430174 lncRNA upstream 150472 29025989 ~ 29026288 (+) True G2125472
TU2430223 lncRNA downstream 49948 29228845 ~ 29233301 (+) True LOC118944852
TU2430224 lncRNA downstream 54728 29233625 ~ 29238420 (+) True G2125513
TU2430274 lncRNA downstream 86150 29265047 ~ 29269424 (+) True G2125560
TU2430312 lncRNA downstream 116695 29295592 ~ 29295808 (+) True G2125595
TU2430316 lncRNA downstream 121536 29300433 ~ 29301842 (+) False G2125596
XM_021589741.2 mRNA upstream 4726 29142988 ~ 29172034 (+) False LOC110508871
XM_036966606.1 mRNA upstream 4726 29143804 ~ 29172034 (+) True LOC110508871
XM_021589740.2 mRNA upstream 70991 29096684 ~ 29105769 (+) True LOC110508870
XM_021589738.2 mRNA upstream 83350 29073723 ~ 29093410 (+) True si:ch211-13f8.1
LOC110508213 mRNA upstream 139425 29036701 ~ 29037335 (+) True LOC110508213
XR_005040231.1 mRNA downstream 53404 29232301 ~ 29232713 (+) False LOC118944852
XM_036966822.1 mRNA downstream 67566 29246463 ~ 29255956 (+) False LOC110508878
XM_036966823.1 mRNA downstream 68741 29247638 ~ 29255956 (+) False LOC110508878
XM_036966821.1 mRNA downstream 68756 29247653 ~ 29255956 (+) True LOC110508878
XM_021589759.2 mRNA downstream 91840 29270737 ~ 29274454 (+) False LOC110508880
TU2429614 other upstream 638348 28522227 ~ 28538412 (+) False LOC110508851
TU2428289 other upstream 1452772 27720600 ~ 27723988 (+) True LOC110508827
TU2427588 other upstream 2067478 27106034 ~ 27109282 (+) True G2123170
TU2427592 other upstream 2072490 27101312 ~ 27104270 (+) True G2123174
TU2427500 other upstream 2231573 26942200 ~ 26945187 (+) True G2123101
TU2430303 other downstream 91888 29270785 ~ 29274451 (+) True LOC110508880
TU2430337 other downstream 141846 29320743 ~ 29323384 (+) True G2125614
TU2431344 other downstream 1031350 30210247 ~ 30211633 (+) True G2126497
TU2432201 other downstream 1355954 30534851 ~ 30568578 (+) True kcnn1a
TU2432265 other downstream 1461790 30640687 ~ 30641243 (+) True G2127299

Expression Profile