RNA id: XM_036966821.1


Basic Information

Item Value
RNA id XM_036966821.1
length 2221
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC110508878
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 29246463 ~ 29255956 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATCAGCAAGTTGAGCTACATGCTGTCTGAACAAGCACAACACTGCGGTGAATGTATGCATTTGTTTAGGCATATCCATGACGTGTGTGTAAATGTCTACCTCTGTGATCTGTCTTTTTCTGAAAAGGAAATAATGGAGGCTGAAGTTGCAGGTGCCCCAAATCAAGGCTGGCATGTGGACGGTGATGGTGATGTCACTACTCTGCCCAGTGAGGGAGAGAAGCAAGtgcgagacacagagacagATGATGAGTCTTCTAGGTTAGAGCAGGAACCCAAGGAAGTATTTTTGCTCATGGATGACCATGGGCTGCAAGATGAATATGTACAGTCTTTTGATTGTCCACCAACTCCCACTTCTGGTTTTCTGGGAGTTCTTAGATATAAGAGGGAGTCCCAGGACCAAGCACCAAACCCAAGGAACATCCTCCCAGAGCCTCTCGTGGACTCTCCAGTGACGTGTGAGTACTGTGGAGAGAAAGCAAGGCCTCCACTTGGACCAACATTTGCAGAGGACCCTGGGatcttctGCTGTGCCCAGTACCAGCAGCTGTGTGACATGCTGGCCCATGAAAGGTGGCTTGCCCTGCAGAGACCTGATCAGGAGGATGACGCAACACTCCCACCTAACAATCAGCCaaccagagaggaggaggagctgcaGGCCCAGGCCCGGGACAGAGAGGAGCACAGaaaGCAGGAGCAAGAGCGAGAGCGACTCTACCAGGACACACAGTCAACCCTCCGATCTGCAGATACCTACACGCCCTTCTCTAGGACCATCAGCTACCAGCTGTCCACCTGTACAGCCAAAGAGGGACAGTGGACTGTTACACAACATCCTGGGATTGAGGAGGACCTGGAAAAAGAAAATGGAGACAACCTTTATGACCATGAGTCATTTGAGTTTGGCATTTCTCCGCATCAGGATGGGGCACAATTTCTGGAGAAGTATTATGCCTGTGGGAGCAAGTTTCTCACAGTCTTCCCAGATGGTTCTGCCCAGGTTTTCTATCCCTCTGGCTTCTTGGCCCTGGTCATAATCTCTGATGGAAGAGAAAGGGTATGTATTGTACATGATGACCACTCCCTTGGGGAGCCAATCAGGGCCCTATTCCAATCTGATGGCAGGGCCACATGTTACCATGGAAACGGTAATGTCTGGCTGAGCTTGGACGCGTCAGGAGGTCAGTGTCTGGATGATGCGGGGGCCAGGATCAGAAGGTGGAGTTGGAGAGGCCACAGCCAGACGCCCACCCCCCTGCGGCCGGTCTTCCTATCTTTAAACCGCAGCCTGGGGGTGAGGGTCCTGGGACAGGAACACATGTTTGTGTCCTTCCTTTCTGCTGGCCAACAGGCCAAGTTCAGTGTGGGGGCCTGTTTGCAGCCAGTGGCTCTGGGGATGATTCAGGCTCCAGGTCCATCCATATCCAAGGAGGGGTGTATTCTATTGGCTGGACGGATAAGGGTCCATCAGGTCATTAGGCATCTCCACCACTGCCTGCGCTGCCCCTCCAACCCAAGGCCTCTGAGAGCTGGACTAGCTCCTAGCCTCCTCTCTCTGGCCAAAAGGTTACTGGACTTGAGTTGCTCTCTTCAGCTTGAGGAGCGTGAGAGGGCCTTTGTTCACAGGTGTCTCCAGGATTGCCTGTGATCTCTATACCAAAGCATCATTATGTGGAAACATTGAACATTTCAGCTCATTATGACGCCACACAGATTTGACAATAGTGATCCTATTAAATGAATTCCTAATTATATGGATTTGACTTACATCACAGCctacagtgccttccgaaagctttcacaacccttgactttttccacattttgttgttacacggtgggataaaaaaaaatggtCAACTATttcacaaaatactctgtcaaagtggaagagaaattctaacatttgtataaaaaaaataatttgtctCCCGGTGTTTGTTGGgatgcagactgaaccaggttttccgcTACGATTTCccatgtgcttagctctattttgTTTCTTTTTACCCTAAACAACTCCCAAGtacttgccgatgacaagcatactcataacatgatgcagccaccaacatgcttgaaaatatgaagagtggtacttagtgatgtgttgtgttggctttgccccaaacacaatgctttgtattcaggatatgacgttaatttctttgccaactTTTTagaagttttactttagtgccttattgcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2430224 lncRNA upstream 9233 29233625 ~ 29238420 (+) True G2125513
TU2430223 lncRNA upstream 14352 29228845 ~ 29233301 (+) True LOC118944852
TU2430259 lncRNA upstream 80765 29166357 ~ 29166888 (+) True G2125548
TU2430218 lncRNA upstream 121890 29119231 ~ 29125763 (+) False G2125510
TU2430274 lncRNA downstream 9091 29265047 ~ 29269424 (+) True G2125560
TU2430312 lncRNA downstream 39636 29295592 ~ 29295808 (+) True G2125595
TU2430316 lncRNA downstream 44477 29300433 ~ 29301842 (+) False G2125596
TU2430317 lncRNA downstream 44477 29300433 ~ 29301842 (+) True G2125596
TU2430338 lncRNA downstream 67742 29323698 ~ 29324403 (+) True G2125615
XR_005040231.1 mRNA upstream 14940 29232301 ~ 29232713 (+) False LOC118944852
XM_036966793.1 mRNA upstream 68756 29176760 ~ 29178897 (+) True LOC110508872
XM_021589741.2 mRNA upstream 75619 29142988 ~ 29172034 (+) False LOC110508871
XM_036966606.1 mRNA upstream 75619 29143804 ~ 29172034 (+) True LOC110508871
XM_021589740.2 mRNA upstream 141884 29096684 ~ 29105769 (+) True LOC110508870
XM_021589759.2 mRNA downstream 14781 29270737 ~ 29274454 (+) False LOC110508880
XM_021589766.2 mRNA downstream 20450 29276406 ~ 29283154 (+) False LOC110508882
XM_021589765.2 mRNA downstream 20464 29276420 ~ 29283154 (+) False LOC110508882
XM_036966975.1 mRNA downstream 20464 29276420 ~ 29283154 (+) False LOC110508882
XM_036966976.1 mRNA downstream 22604 29278560 ~ 29283154 (+) True LOC110508882
TU2429614 other upstream 709241 28522227 ~ 28538412 (+) False LOC110508851
TU2428289 other upstream 1523665 27720600 ~ 27723988 (+) True LOC110508827
TU2427588 other upstream 2138371 27106034 ~ 27109282 (+) True G2123170
TU2427592 other upstream 2143383 27101312 ~ 27104270 (+) True G2123174
TU2427500 other upstream 2302466 26942200 ~ 26945187 (+) True G2123101
TU2430303 other downstream 14829 29270785 ~ 29274451 (+) True LOC110508880
TU2430337 other downstream 64787 29320743 ~ 29323384 (+) True G2125614
TU2431344 other downstream 954291 30210247 ~ 30211633 (+) True G2126497
TU2432201 other downstream 1278895 30534851 ~ 30568578 (+) True kcnn1a
TU2432265 other downstream 1384731 30640687 ~ 30641243 (+) True G2127299

Expression Profile