LOC110508925 (LOC106598970)


Basic Information

Item Value
gene id LOC110508925
gene name LOC106598970
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 30658482 ~ 30666503 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589838.2
ACCTCAAACATAATCCTGTCTTCTCACTTTCACACCATATTACGCTCAGGAGAGAAAACTGGAACTTTACTGTTTGGGCTGTCAATGTGTGCTACCTTAGCTCAGAAGCGGGATACTATCTTCACCACCAGGGTCTGCCTCAGATATCGCCACTACCAGGGTCTGCATCAGATATCTCCACTACCAGGGTTTGCCTCAGATATCTCTACTACCAGGGTTTGCATCAGATATCTCCACTACCAGGGTCTGCATCAGATATCTCCACTACCAGGGTTTGCATCAGATATCTCCACTACCAGGGTTTGCATCAGATATCTCCACTACCAGGGTTTGCATCAGATATCTCCACTACCAGGGTTTGCATCAGATGTCTCCACTACCAGGGTCTGCCTAAAATATCTCCCATCTTATCTATTTATTTGGCTTTTTGTTTGGGAAAGAAGAGTTCAGTGCTTGTGGTTTAACGCTCTCTACTTGGTCCTCAAGAAGTGGACCCCATTTGAACCCTCTAAATCGGTCTGTGATTGGCTGTTTCTCAGTAAgggtgttctgtactgtactgtgcttcAGCGGCTAAACAGCCATGTACAAAAGCAGTTACTCCCAGGCCAAGTTTGGCTTGGAGGCCAGGAGGAAGATCCAGAAGCCCAGAGGGAAGAGCTGTGGCTACTACATgagggttgtcttcttcttctcctctctgatCCAGTCACTCATCATCGTCAGCCTGGTGCTCTTCCTGGTCTACGGGAGCTCCCCAGACGCGGCGGCCGAGAGCCGGGTCAAGGACCTGGAGAAGAGCTTCAACCACCTCTCCATTGACAACATCAACCTCCGGCAGCAGGGAAAGAACCTGACGAAGCTCCTGAACGCCACCCTGACTGACAAGATGCGCAACGACAAATATATGATGAGTCTGCGTCAGGTGGCAAACGGGTCTGGCATGTTCATCGCCAATCTCAAAGGACTAGTGACTCAGTGTGAAAATGATAAGGGAATATGTCAGATTCAACTTAGAATGAGCCAATGCTTCAGGGCCATGCCCCCAAATGAAAACCAGGTCCAGCAGCTGGAGCAGTTGCTAAAGCTAGTGAGCTCCAACTTCAGTCAGACGGTGCAGTTcatgaggatggagatggagaacaCAGCCATGGACCGGGACACCCTGACCCTGGAGGCCATCTTCCTCCGGAGGGACAAGACCTTCCTGCAGAGACAACTGGAGGGCTACAGGAAGAAGTGCAAGGAGGACTTTGTCCAATCCCTGGCCGGCATCTCCGACGTCTCTAAAGCCTTCCTGTTGAAGATCGACAACCTTCTGCCCAATGTCAGCCCCTTCCTGCTCACCTGCGAGAAGCAGCTCCACCACCTGGACCAGATCCGCAACAACTGCACGGGTCTGTCCCGCGAGGTGGAGAACAAGTTCCAGCAATACCTGAACAAGGTGGGCTCTCAGATATTGGAGATTGAGGGTTGCAGTGCCAGACTGCAGGCAGATAAAGACCAGCTGAAGGAGGTCTACGACTGGTGCAGCTACAACCGCAGTGCCATGGCCCTGGAGCACCGCGAGAAGCTTCAGAAGACCCAGGAGAAATACGACCGAGAGACGGAGAGGCTGCTGATGGATAGCAGAAGGCTGCAGGGGGACAAGGAGCTACAGGAGACGGTGATGAAGGTGAAGGAGGGCGAGATCGGCATTCTCAAGGACAAGATGAATAACCTCAACACCTCACTGGTCAACTGTGGCTCCAGGACCGGAATGGGTAACCCAGGAATGTCCGTACCAAATCAGACTGGACCCTGGAGTAGCAGGCATGGGATGGGTGACCCTGGCTCAACTGGGAATGGATTTGGCAGTGCAGGGGcagatgggacagggacaggtaaCAAGCCAGGCTCAACTAACcaatttggtaatacaggaatgGGAAGGACAGGGTCAAGTTCAAGTTCTACTGCATTGGGTTCGTTAGGGCCAGAAAAAGTGTGGGCAGGTCGAACAGGGACAGGCGCGACAGGAGAGTTGGGTGCAATGAGTTACGCAGGGATGGGGGAGGCAGGGTTGAGTGCAACAGGGCAGGGCAACAGGGGGCCAACCGAAATGGGTTTGGAGGCTACAGGTGGGTGGGGTTCCACAGGAATGGGTAACACAGGGATGGGTGGGGAAGGGTCTAGTGTAACAGGGCAAGGTAAAAGGGGGTCAACCGCTGGAACAGAATTGGGTGCTGGAACTGGTGGGTGGGGTGCTTCTGCAACAGGAAACGACAACACAGGACTGGGTAGGTCCGGGTCAAGTGCTTCGTCATCATCAGGCGCCACAAGGATGAACGGTTCAGGAATGGACGGCTCGAAAGGTTTAGCACATATCAATCAACACTTACGAGAACTGCAGCAGTATTCTAATGCCGACTCCGGCTCAGAAGTCTCTGGGTAATCCATGACATTTCAGAGGAAAATGGAGGAaaacctataaaacccagtctcCTCATATTGAGTTCTGGTTtgtcaatatacagtaccagtcaaaagttcacctactcattccaggggttttctttattttttactattttctatgttgtagaataa
>XM_021589839.2
ACCTCAAACATAATCCTGTCTTCTCACTTTCACACCATATTACGCTCAGGAGAGAAAACTGGAACTTTACTGTTTGGGCTGTCAATGTGTGCTACCTTAGCTCAGAAGCGGGATACTATCTTCACCACCAGGGTCTGCCTCAGATATCGCCACTACCAGGGTCTGCATCAGATATCTCCACTACCAGGGTTTGCCTCAGATATCTCTACTACCAGGGTTTGCATCAGATATCTCCACTACCAGGGTCTGCATCAGATATCTCCACTACCAGGGTTTGCATCAGATATCTCCACTACCAGGGTTTGCATCAGATATCTCCACTACCAGGGTTTGCATCAGATATCTCCACTACCAGGGTTTGCATCAGATGTCTCCACTACCAGGGTCTGCCTAAAATATCTCCCATCTTATCTATTTATTTGGCTTTTTGTTTGGGAAAGAAGAGTTCAGTGCTTGTGGTTTAACGCTCTCTACTTGGTCCTCAAGAAGTGGACCCCATTTGAACCCTCTAAATCGGTCTGTGATTGGCTGTTTCTCAGTAAgggtgttctgtactgtactgtgcttcAGCGGCTAAACAGCCATGTACAAAAGCAGTTACTCCCAGGCCAAGTTTGGCTTGGAGGCCAGGAGGAAGATCCAGAAGCCCAGAGGGAAGAGCTGTGGCTACTACATgagggttgtcttcttcttctcctctctgatCCAGTCACTCATCATCGTCAGCCTGGTGCTCTTCCTGGTCTACGGGAGCTCCCCAGACGCGGCGGCCGAGAGCCGGGTCAAGGACCTGGAGAAGAGCTTCAACCACCTCTCCATTGACAACATCAACCTCCGGCAGCAGGGAAAGAACCTGACGAAGCTCCTGAACGCCACCCTGACTGACAAGATGCGCAACGACAAATATATGATGAGTCTGCGTCAGGTGGCAAACGGGTCTGGCATGTTCATCGCCAATCTCAAAGGACTAGTGACTCAGTGTGAAAATGATAAGGGAATATGTCAGATTCAACTTAGAATGAGCCAATGCTTCAGGGCCATGCCCCCAAATGAAAACCAGGTCCAGCAGCTGGAGCAGTTGCTAAAGCTAGTGAGCTCCAACTTCAGTCAGACGGTGCAGTTcatgaggatggagatggagaacaCAGCCATGGACCGGGACACCCTGACCCTGGAGGCCATCTTCCTCCGGAGGGACAAGACCTTCCTGCAGAGACAACTGGAGGGCTACAGGAAGAAGTGCAAGGAGGACTTTGTCCAATCCCTGGCCGGCATCTCCGACGTCTCTAAAGCCTTCCTGTTGAAGATCGACAACCTTCTGCCCAATGTCAGCCCCTTCCTGCTCACCTGCGAGAAGCAGCTCCACCACCTGGACCAGATCCGCAACAACTGCACGGGTCTGTCCCGCGAGGTGGAGAACAAGTTCCAGCAATACCTGAACAAGGTGGGCTCTCAGATATTGGAGATTGAGGGTTGCAGTGCCAGACTGCAGGCAGATAAAGACCAGCTGAAGGAGGTCTACGACTGGTGCAGCTACAACCGCAGTGCCATGGCCCTGGAGCACCGCGAGAAGCTTCAGAAGACCCAGGAGAAATACGACCGAGAGACGGAGAGGCTGCTGATGGATAGCAGAAGGCTGCAGGGGGACAAGGAGCTACAGGAGACGGTGATGAAGGTGAAGGAGGGCGAGATCGGCATTCTCAAGGACAAGATGAATAACCTCAACACCTCACTGGTCAACTGTGGCTCCAGGACCGGAATGGGTAACCCAGGAATGTCCGTACCAAATCAGACTGGACCCTGGAGTAGCAGGCATGGGATGGGTGACCCTGGCTCAACTGGGAATGGATTTGGCAGTGCAGGGGcagatgggacagggacaggtaaCAAGCCAGGCTCAACTAACcaatttggtaatacaggaatgGGAAGGACAGGGTCAAGTTCAAGTTCTACTGCATTGGGTTCGTTAGGGCCAGAAAAAGTGTGGGCAGGTCGAACAGGGACAGGCGCGACAGGAGAGTTGGGTGCAATGAGTTACGCAGGGATGGGGGAGGCAGGGTTGAGTGCAACAGGGCAGGGCAACAGGGGGCCAACCGAAATGGGTTTGGAGGCTACAGGTGGGTGGGGTTCCACAGGAATGGGTAACACAGGGATGGGTGGGGAAGGGTCTAGTGTAACAGGGCAAGGTAAAAGGGGGTCAACCGCTGGAACAGAATTGGGTGCTGGAACTGGTGGGTGGGGTGCTTCTGCAACAGGAAACGACAACACAGGACTGGGTAGGTCCGGGTCAAGTGCTTCGTCATCATCAGGCGCCACAAGGATGAACGGTTCAGGAATGGACGGCTCGAAAGGTTTAGCACATATCAATCAACACTTACGAGAACTGCAGCAGTATTCTAATGCCGACTCCGGCTCAGAGTGAGTTCATATACCCTCTGGGTATTTAAAGTCTCTGGGTAATCCATGACATTTCAGAGGAAAATGGAGGAaaacctataaaacccagtctcCTCATATTGAGTTCTGGTTtgtcaatatacagtaccagtcaaaagttcacctactcattccaggggttttctttattttttactattttctatgttgtagaataa

Function

NR:

description
plasmalemma vesicle-associated protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589838.2 False 2589 mRNA 0.51 6 30658482 30666503
XM_021589839.2 True 2618 mRNA 0.51 6 30658482 30666503

Neighbor

gene id symbol gene type direction distance location
zgc:154006 LOC106598968 coding upstream 28661 30608287 ~ 30629821 (+)
LOC110508922 ocel1 coding upstream 50460 30595929 ~ 30608022 (+)
kcnn1a LOC106598974 coding upstream 66085 30534338 ~ 30592397 (+)
si:rp71-39b20.4 LOC106598976 coding upstream 192241 30461480 ~ 30466241 (+)
LOC110508915 LOC106598984 coding upstream 262570 30374871 ~ 30395912 (+)
LOC110508926 tm16h coding downstream 13141 30679644 ~ 30700351 (+)
LOC110508929 LOC106598953 coding downstream 40751 30707254 ~ 30716642 (+)
LOC110508930 LOC106598949 coding downstream 54595 30721098 ~ 30751910 (+)
LOC110508931 LOC106598945 coding downstream 122476 30788979 ~ 30866066 (+)
LOC110508934 LOC106598943 coding downstream 216557 30883060 ~ 30902488 (+)
G2127307 NA non-coding upstream 8126 30650133 ~ 30650356 (+)
G2127303 NA non-coding upstream 13049 30644654 ~ 30645433 (+)
G2127294 NA non-coding upstream 24471 30633534 ~ 30634011 (+)
G2127252 LOC106598972 non-coding upstream 25979 30629951 ~ 30632503 (+)
G2127293 NA non-coding upstream 31971 30625836 ~ 30626511 (+)
G2127251 NA non-coding downstream 33 30666536 ~ 30667998 (+)
G2127310 NA non-coding downstream 2004 30668507 ~ 30668724 (+)
G2127312 NA non-coding downstream 7429 30673932 ~ 30674542 (+)
G2127315 NA non-coding downstream 10205 30676708 ~ 30676961 (+)
G2127333 NA non-coding downstream 51010 30717513 ~ 30717897 (+)
G2127299 LOC106598972 other upstream 17239 30640687 ~ 30641243 (+)
G2126497 NA other upstream 446849 30210247 ~ 30211633 (+)
G2125614 LOC106599059 other upstream 1335098 29320743 ~ 29323384 (+)
LOC110508880 NA other upstream 1384031 29270737 ~ 29274454 (+)
LOC110508221 LOC106598877 other downstream 973799 31594783 ~ 31643462 (+)
G2128189 NA other downstream 1072809 31739312 ~ 31740070 (+)
G2128614 NA other downstream 1278661 31945164 ~ 31948898 (+)
LOC110508984 NA other downstream 1387173 32053231 ~ 32055655 (+)
G2128753 NA other downstream 1602815 32269318 ~ 32274380 (+)

Expression


Co-expression Network