LOC110508981 (LOC106598847)


Basic Information

Item Value
gene id LOC110508981
gene name LOC106598847
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32029589 ~ 32032860 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589915.2
TTACAAGCTCGCTGGAATCCGAGAGGGACTGATGTACATACTGGTCAGGTATCAtctcctccctccgtctcttGTTCTGCTTACTCTGCTACTTGCCAGCACCATGGGCTGTATCCAGAGCATCGCCTGCAAGCCGCGTATTAGAAGGGAGAACATTGTAGTCTACGAGGTATCGGCCTCCATTGACCAGTGCCCAACGGTGATAGAGGAGAACTCGCCTATAGTGCTGCGGTATAAGACACCATATTTCAGGGCCTCAGCCGGGATCGTAATGCCTCCGGTGCCCCGCAATGAAACCTGGGTGGTGGGTTGGATCCAGGCTTGTACTCAAATGGAGTTCTACAATACTTATGGTGACATTGGCATGTCCAGCTGGGAGTTACCGGAGCTCCGCGAGGGCCGGGTCAAGGCCATCAGCGACTCGGACGGGGTCAGCTACCCCTGGTACGGCAATACCACCGAGACTGTCACCCTCACGGGCCCCACGTCCAAGCCGTCGCGCCTCACGGTCAGCATGAACGACAACTTCTACCCCAGTGTGACCTGGGCCGTGCCCATCAGCAACAGCAACACAGCCATGCTGTCACACATCACCCGAGACCAGAGCTTCATCACCTGGCTGGTTGCCATCAACTCTGTTACCAAGGAGCGCATTGTGCTGCAGACGGTGCGGTGGCGGATGCGGGTGGACATCGCCGTGGACCCTGACATGCCCCTTGGCTCCCGGGCCTCCCTAGTGGGCCGTCCTCACCAGGAGCAGCCCCACATCCTCAACTATCAGGAGCCAATCCTCTCCAACGCCCTGGGACGACCCAATGCCAACGACGCCCAAGTGCTGATGTGGAGGCCCCGCAGAGGGGCGCCCCTAGTGGTCATACCGCCCAAATAAGGTCAAAAGGACTGAGAAAAAAGAGATGTGATTGGTTCACGGTAATGAGGAAGTGTGGACCATCGCAAAGCAGGGGAATTATGAGTTATCTTGCCAAGATGTCAGCTCTTCACTCATACCTACTACTGTCAGGGTTCAATGGATGATAAGAAATTGTGAAACAGTATTTTCTCTGGACTGGACTGCATTGGAATTGGCACAGCGGAAATTTACAGAGCTAGACTGGTTTTAGGTGCAGGCTCAAAACTGCATCAGAGTTTGATTAAGTTGGACTGTTTTTGGACGGCCACAGTCCTGAATTAGAGTTGTATCCATTGGACAGAAAGGGACAGAGCTATCGAAGTTTCATTGAGGTGGACTGAACACAGAACTGCATCCTACTGTAGATCTTATTGCATGAGAAAGAAAACGGTCTATGACTGGAATAAGAATACCATTTTATATAAGCTCATCACATTGAGGATATTGAATGGAACTTCTTACATTGGCCATGAAATCCTGCAAGCTGGAAAATCTCCTCAGTGCCAATTATGGATATAACAGCCTTTAACGCTCatacaacattttaaaaacacaTCGTTAGATTTAATTATGAGTCAAATCATATTATATAAATTTTCTGTTAGTTTAAGATTAACTCACATCAATCAGATTGTATTAAGAACACCGACTTGGCATAAAGTTCTACAAAGAAATGGTCTGATTGTAGTCTTATTGAAATACGCCATGTTTATCCATTCAAATAGAAACATAGAACATGGACGGGTTAAAGGTGTGGGTTTTCTCGTGTCGGTTGAGTATCTACACGTACAAACATGAATGTCCAAGTCTAAGTCCAACCCTTGCCACTACCCATATTGCTTATCTTTACCATCCATTCCGATATACTCAAAGTGTCTTGGGTGAGGGGATAGGGGTTTATTTGGGATTGGGCCATAGTCCCACAGTACACTATTAAGGCAGTGGTCTGGGCTGGTATTGGGTTTATTCAGAGGTGTCCCTATCCTATTACACAATGTCACATGATTCATTCTCCATCTATGCTCCTCACCAGGTTCAGTCCACACCTTcccatctgtctgtccatctatttctctccctcccatcactccattctctctcctctccacatgtCACAATCCCTGAATTTCTCTCCACTCCAAGACTATGCAAACACAGAGGGACTGTTGAGTGAGATAAAaaaaagtaccagtcaaaagtttggacacacctactcattcaagggtttttctttattttttactattttctacattgcagaataatag

Function

NR:

description
PREDICTED: protein FAM78B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589915.2 True 2178 mRNA 0.47 3 32029589 32032860

Neighbor

gene id symbol gene type direction distance location
LOC110508980 bcl6 coding upstream 8708 32015146 ~ 32020881 (+)
cldn1 LOC106598850 coding upstream 68377 31957635 ~ 31961212 (+)
LOC110508974 LOC106599183 coding upstream 93783 31933762 ~ 31935806 (+)
LOC110508972 LOC106598853 coding upstream 108641 31880157 ~ 31921755 (+)
LOC110508971 LOC100195537 coding upstream 154860 31870378 ~ 31874729 (+)
LOC110508984 NA coding downstream 20371 32053231 ~ 32055655 (+)
LOC110508986 LOC106598840 coding downstream 54792 32087652 ~ 32098796 (+)
si:ch211-13f8.2 LOC106598837 coding downstream 76910 32109770 ~ 32119075 (+)
LOC110508995 LOC106598827 coding downstream 168955 32201815 ~ 32223340 (+)
LOC110508999 NA coding downstream 236355 32269215 ~ 32274380 (+)
G2128614 NA non-coding upstream 80691 31945164 ~ 31948898 (+)
G2128456 NA non-coding upstream 106840 31922097 ~ 31922749 (+)
G2128516 NA non-coding upstream 146492 31882752 ~ 31883097 (+)
G2128653 NA non-coding downstream 1961 32034821 ~ 32037428 (+)
G2128680 NA non-coding downstream 42135 32074995 ~ 32075781 (+)
G2128693 NA non-coding downstream 58045 32090905 ~ 32091522 (+)
G2128668 LOC106598832 non-coding downstream 124175 32157035 ~ 32192779 (+)
G2128744 NA non-coding downstream 153993 32186853 ~ 32237899 (+)
G2128189 NA other upstream 289519 31739312 ~ 31740070 (+)
LOC110508221 LOC106598877 other upstream 386127 31594783 ~ 31643462 (+)
G2127299 LOC106598972 other upstream 1388346 30640687 ~ 30641243 (+)
kcnn1a LOC106598974 other upstream 1461011 30534338 ~ 30592397 (+)
G2128753 NA other downstream 236458 32269318 ~ 32274380 (+)
pfn2l LOC106598797 other downstream 598429 32631289 ~ 32700844 (+)
G2129371 crb1 other downstream 716068 32748928 ~ 32749568 (+)
zbtb41 zbtb41 other downstream 751008 32759166 ~ 32803922 (+)

Expression


Co-expression Network