G2129371 (crb1)


Basic Information

Item Value
gene id G2129371
gene name crb1
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32748928 ~ 32749568 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2434698
GGGCAACTGTGTTGAGTCATGGGGCAACTGTGGTTTGTcagtatagtatgtagtatatagtatagtgtatgtCCAGCTACTCACACTGCAGACGTTGTCACTCATACATCCCTGTGTGACGTTGACCAGCTCCTCCACACCGTATGAGGCCACTGAAGTTCCTATGGGAAAGAACTGCAGCCGTTTATTGTTTATTCTCAGGTCCTGGATACAGCCTTTCAGGTAACCCCCGAAGGAGGCCGAGGCTCtctggtcagacaagcccccaaCGTAGACCAGGTCCCCTGGCTGCGCCACCACGGGCCGGATGGGAATGGTTCCATGGCTCTGGGCCGACTGGAACAGGGTCACAGAGTCGCCCTCCAGCTGCACCGTCACCAAGTGAAAGTGGCCATCACTGACCACTTTGCTTCCCGCCAGGCTCTCAAAATTGTTCACCTGAACTTTGACCCGGCCGTCATCCAGCCACAGGCGGAGGTACTGGCTGGTGCTGTTAGCCAGGACCAGGAGAAGGCCACTGGGGCGCCGGGTACGCACAAACATGGATATGGTGATGGTGCCAGAACCCAGGGGATCGTCCAAGGAGAA

Function

symbol description
crb1 Predicted to enable calcium ion binding activity. Acts upstream of or within cell projection morphogenesis and establishment or maintenance of epithelial cell apical/basal polarity. Part of protein-containing complex. Is expressed in nervous system. Human ortholog(s) of this gene implicated in pigmented paravenous chorioretinal atrophy and retinal disease (multiple). Orthologous to human CRB1 (crumbs cell polarity complex component 1).

NR:

description
protein crumbs homolog 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2434698 True 588 TUCP 0.56 2 32748928 32749568

Neighbor

gene id symbol gene type direction distance location
LOC110509011 LOC106598790 coding upstream 30081 32710595 ~ 32718847 (+)
LOC110509009 LOC106598794 coding upstream 58429 32685536 ~ 32690499 (+)
pfn2l LOC106598797 coding upstream 67075 32631289 ~ 32700844 (+)
LOC110509005 NA coding upstream 126121 32614567 ~ 32622807 (+)
nmur1b LOC106599180 coding upstream 159047 32581133 ~ 32589881 (+)
zbtb41 zbtb41 coding downstream 9598 32759166 ~ 32803922 (+)
LOC110508224 kcnt2 coding downstream 65136 32814704 ~ 32836798 (+)
LOC110509022 b3galt2 coding downstream 123363 32872931 ~ 32911932 (+)
LOC110509024 LOC106598521 coding downstream 301044 33050612 ~ 33070407 (+)
LOC110509025 LOC106598617 coding downstream 374904 33124472 ~ 33126977 (+)
G2129359 NA non-coding upstream 16639 32731914 ~ 32732289 (+)
G2129358 NA non-coding upstream 17353 32731296 ~ 32731575 (+)
G2129357 NA non-coding upstream 19998 32727798 ~ 32728930 (+)
G2129356 NA non-coding upstream 21290 32727203 ~ 32727638 (+)
G2129355 NA non-coding upstream 22047 32726581 ~ 32726881 (+)
G2129379 NA non-coding downstream 39011 32788579 ~ 32796983 (+)
G2129282 NA non-coding downstream 40447 32790015 ~ 32811998 (+)
G2129383 NA non-coding downstream 67063 32816631 ~ 32816845 (+)
G2129384 NA non-coding downstream 67468 32817036 ~ 32818438 (+)
G2128753 NA other upstream 474548 32269318 ~ 32274380 (+)
LOC110508984 NA other upstream 693273 32053231 ~ 32055655 (+)
G2128614 NA other upstream 800626 31945164 ~ 31948898 (+)
G2128189 NA other upstream 1008858 31739312 ~ 31740070 (+)
G2129639 LOC106598496 other downstream 558530 33308098 ~ 33308991 (+)
G2129708 NA other downstream 682183 33431751 ~ 33432107 (+)
G2129724 LOC106598452 other downstream 702644 33452212 ~ 33452873 (+)

Expression


Co-expression Network