LOC110508224 (kcnt2)


Basic Information

Item Value
gene id LOC110508224
gene name kcnt2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32814704 ~ 32836798 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966336.1
aaggcactgtatatattgaaATCATCATTAATCATCATCACCAATGAACCAATGACTCCAGTGACTGCAATGTGCGCTTCAGATGTTGCGGACACTGATACCCACGCAAAGCGTCTCAAGACGTTATAGAATGATGCAATTGGACTTTGGGTGTAGTCGCACATGCACGGCCAAGGATGCTCAAAAATGGGACGATTTTGAATAATTAGCCTATAGCTGCTTCCTTGTTTTCCAAATAATGTAACATCATTTGTGTGATGTATGCAGTCTTTTCGAGCGTTTGGAGTGAGAAGACACACCTTTTGTGCACTCGGAGTACAACAATTGTTCTAAAATACAGTCATAAAAGTGTACATTTCAGATTTGGAGAACTATGGTTGATTTGGAGAGCGAAGTACCCCCTCTTCCCCCGAAGTATAGATTCAGAGACTTACTCCTCGGGGACCAGAACTTACAAAATGATGAGAGGGTGCAAGTAGAATTTTACGCCAATGAAAGTACTTTCAAAGAGATACTTAAACTGTTCTTCATCAAAAACCAAAGATCAAgccTGAGAAGACGAGTGTTCGACTTCTCCATGAAGGTCCTGAGCTGTATCCTATACATGTGTCGTGTGTTGACAGACGACCCATCCATAGGACATGGCTGGTACATCTGTGGCATCCAGCACCTGGAGCGGGCGGGCAAGAAGCTGACGGTGTTCGACTCCTGGTACTTCTGCGTCGTCACCTTCTCCACAGTGGGCTACGGCGACGTCATGCCCAACGTGTGGCCCTCCAAGCTGCTGGTGATCGTCATGATCTCTGTAGCCCTGGTGGTGCTGCCCATACAGTTTGAGCAGCTGGCCTACCTgtggatggagagacagaagtCGGGTGGGAATTACAGCCGTCACCGCGCCCAGATGGAGAAACATGTGGTGCTGTGTGTCAGCTCCCTCAAGATAGACCTTCTGATGGACTTCCTCAACGAGGTCTACGCCCACCCCGGGCTGCAGGACTACTATGTCATCATCCTGTATCCAACAGAGATGGACCCCCAGGTGCGCCGGGTGCTCCAGATCCCCCTGTGGTCCCAGCGGGTCATCTACCTCCAGGGATCGTCCCTCAAGGACCAGGACCTCATACGAGCCAAAATGGACAATGCAGAGGCTTGTTTCATCCTAAGCAGTCGCTGTGAGGTGGACCGCACCGCCGCAGACCATCAAACCATTCTGCGAGCTTGGGCTGTGAAGGATTTCGCTCCAAAGTGCCCCGTTTACGTCCAGATTCTGAAGCCAGAGAATAAATTCCATGTGAAATTTGCAGTCTCAATAGCTGGGCCTGACACACAGTTCCTGGAGGCTGTCTGTGGGTTCCCCATGGTTTACTACATGGTGGGCTCCATCGATAAcCTGGATGACCTCCTGCGTTGCGGTGTGTCCTTTGCAGCCAACATGGTGGTGGTGGACAAGGAGAGCACCATGAGTGCAGAAGAGGACTACTACATGGCTGATGCCAAGACCATCGTCAATGTGCAGACACTGTTCAGGTTGTTCTCCAGTCTCAGTATCATCACCGAGCTAACCCACCCCGCCAACATGAGGTTTATGCAGGTCAGAGCTAAGGACTGgtactctctggctctctctaaACTGGAGAAGGTAAGCCCCTtctatgtcctgtcctgtcctgtcctgtcctgtctgccaGCCCAGTCGTTTGTCAAAGACTATATTATCTCCATCACCAGGCTGCTGCTGGGCCTGGATACCACCCCAGGCTCTGGATTCCTCTGCTCTGTGAGTTACTCTCTGGGTGCATCTCAATGGTCAAAAGTGGTTTCCTCTCCACGTCTCAGGCAGAAGGAGAAAGAAGACAAAGAGAGGAGGCgtctttCAATGCGAGCCATCCTCCCAATCACAGCTCTCGGGTGCGTGGAGGACTTAGACGACCCCAAGGAGCAGAGAGACCGAGAACTCCCCCCTGTGGCCGGAGGGCTCCACCACACCTCCACCTCCAGCGACCCATCGGACGGGAAGGCTCCCCTGCTGAGGAGGAAGAGCGTGCAGTGGGCGCGGAAGCTGAGCCGGAGGGGGACTCGAGGGAACCAGCGGGGGGCTCAGAGGGGGGGCCAGCGGGGTCTGAGGGCCAGACGCTCGGAGAGACAGGAGCTGGACGAGCTGGTCAGCAACAGGATGAAAAGCCTTGGGCTCTGGGCCACGGCTTGCGATGACATGAGTGAGAACCAGACTACTCAGCCTGACACCAGGCTGGAGCTCAATGACATAGTGTATATCATCCGTTCAGATCCCCTGGGGTACGTCCCTAAAGCTGGTGGCAGCAGGGAGAGTCTGGGAAGCAGCACATGTCTTGGGGAGCACACCAAGACAGACGCCTTTCTGATCCATACTTACACACAACCTGCctatactgtttctgctggggttggttaaagggatagttcacttttTGCACTGCTAACTGATACAATCGGTTTCCAGTAGCATTGCTACAATACCAAAAACATGAACTATTCCTTTAATGCCATAATTAGGTTTTACGTCCTACAGTTCACATTGCATTGTGAaaagcatgg
>TU2434712
TTTTGCATCAGTAACAAATAGCATTGGTTATAACTGTTGAACCTGTTATAACTAAGGGACCCAGATGTTCTCCTGGTCAAGTCACATGGTGAGGAAGTGCTCCTGACCCTAAGTACGACATtataacctctctgtctctctgtctcccaggccTGAGAAGACGAGTGTTCGACTTCTCCATGAAGGTCCTGAGCTGTATCCTATACATGTGTCGTGTGTTGACAGACGACCCATCCATAGGACATGGCTGGTAAGGACATTCATTCCATGTGTCGTAGGTGCATTTACATAC
>TU2434612
TTATTTAATTGGCCTACAGAGGCTAATCTCTTTAATTAGCCTACCAAGGCTTATTTAAACAAGGTTATCTCTGTGGCACAGACTGACTTTGCTTAAGGGCATGTACTGTAGTAATTATAGTTATTTATTACACAATTTTGTACCTCCCAGATATTTTATGTTAAAACATGTAACATTATTTTTTCTGTCACAATGTGTTCATATGCATCCCAATGTCCATATAATATAATGCTAGTCGAATTGGAATGTGTTGATTTCTGGATGACCAGGAATGACCCTtctatgtcctgtcctgtcctgtcctgtcctgtctgccaGCCCAGTCGTTTGTCAAAGACTATATTATCTCCATCACCAGGCTGCTGCTGGGCCTGGATACCACCCCAGGCTCTGGATTCCTCTGCTCTGTGAGTTACTCTCTGGGTGCATCTCAATGGTCAAAAGTGGTTTCCTCTCCACGTCTCAGGCAGAAGGAGAAAGAAGACAAAGAGAGGAGGCgtctttagactactgagattcACCCGTTGTACTGTACAGTGGTCCTATGTGTGACAGCACAGCAGCCTTTACTTGCCTGTCCTAATCCTTACACTGACAGGTAAAAGTGACTCCACAGTCATTTAAAATCACTGTACAGTTGTTCCTCCTGTAGAGAAATGGACTTTGAAATGACCTTTTAGATGCAGATCTCTGAGGATGACCTGTGGATCCAGACATATGGAAGGCTCTATCAGCATCTACAGGACTGAGTCCCAGACAGCAGATTCCTCTGAGGAGGTGCCCTCTAGACCGCAAGGCTGTTTTAACATTGTTGACATTCATTTGTTTGGCTGTGAAATCCCAGTTTCGTGTTTTCTTTTTTCTTGTGTTAATTACATATAACAGCGGCATTGATTATGCTGTcattctgttgtgtgtgtgtgtttttcttctttttttctcattTGTTACGTATAAATGTTTAGTCTGTATGCTTTCATGGTTATTTAAGCATGTTACAACACAGTAAGCAACATTAATGTCATTCATCTCTTTTCTTTTCATTCTCCATCATAAGCAATGCGAGCCATCCTCCCAATCACAGCTCTCGGGTGCGTGGAGGACTTAGACGACCCCAAGGAGCAGAGAGACCGAGAACTCCCCCCTGTGGCCGGAGGGCTCCACCACACCTCCACCTCCAGCGACCCATCGGACGGGAAGGCTCCCCTGCTGAGGAGGAAGAGCGTGCAGTGGGCGCGGAAGCTGAGC
>TU2434609
GGCCAGACGCTCGGAGAGACAGGAGCTGGACGAGCTGGTCAGCAACAGGATGAAAAGCCTTGGGCTCTGGGCCACGGCTTGCGATGACATGAGTGAGAACCAGACTACTCAGCCTGACACCAGGCTGGAGCTCAATGACATAGTGTATATCATCCGTTCAGATCCCCTGGGGTACGTCCCTAAAGCTGGTGGCAGCAGGGAGAGTCTGGGAAGCAGCACATGTCTTGGGGAGCACACCAAGACAGACGCCTTTCTGATCCATACTTACACACAACCTGCctatactgtttctgctggggttggttaaagggatagttcacttttTGCACTGCTAACTGATACAATCGGTTTCCAGTAGCATTGCTACAATACCAAAAACATGAACTATTCCTTTAATGCCATAATTAGGTTTTACGTCCTACAGTTCACATTGCATTGTGAaaagcatgggggggggggggggggggggggggggggtagcgatCAGTATAATTTCAGAACGTATCACCCCATACTGTATCTGCTGTTCAACTGAAACGGATGTCTtaaactctatctctctctttcacaatgTGGCCTTTCCAGAGGATATACTCAATGTAGGAACTTAGGGGTTTTAAAGACACTCCATGGGGTCTTTGTTTTCACGTTTGGGGTGTGGGGGAAATTAAACTGTTTAGGCACGCTCTGCAAAGTCCACCTCTGTTCTTAGTATGCAGTATACTCCATATTACCATATGTACTGTCTATTTattactttgtagaataatatgtCAATCCAATCAATCATGAATTGTTACTGTACTCATC

Function

symbol description
kcnt2 Predicted to enable potassium channel activity. Predicted to act upstream of or within potassium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 57. Orthologous to human KCNT2 (potassium sodium-activated channel subfamily T member 2).

NR:

description
potassium channel subfamily T member 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966336.1 False 2577 mRNA 0.52 18 32814704 32836438
TU2434712 False 292 lncRNA 0.46 1 32816191 32816482
TU2434612 False 1248 lncRNA 0.44 2 32833201 32834911
TU2434609 True 810 lncRNA 0.46 3 32834971 32836798

Neighbor

gene id symbol gene type direction distance location
zbtb41 zbtb41 coding upstream 30415 32759166 ~ 32803922 (+)
LOC110509011 LOC106598790 coding upstream 95857 32710595 ~ 32718847 (+)
LOC110509009 LOC106598794 coding upstream 124205 32685536 ~ 32690499 (+)
pfn2l LOC106598797 coding upstream 132851 32631289 ~ 32700844 (+)
LOC110509005 NA coding upstream 191897 32614567 ~ 32622807 (+)
LOC110509022 b3galt2 coding downstream 36493 32872931 ~ 32911932 (+)
LOC110509024 LOC106598521 coding downstream 214174 33050612 ~ 33070407 (+)
LOC110509025 LOC106598617 coding downstream 288034 33124472 ~ 33126977 (+)
LOC110509026 LOC106598516 coding downstream 320203 33156641 ~ 33165714 (+)
LOC110508226 LOC106598614 coding downstream 340314 33176752 ~ 33212483 (+)
G2129282 NA non-coding upstream 2706 32790015 ~ 32811998 (+)
G2129379 NA non-coding upstream 17721 32788579 ~ 32796983 (+)
G2129359 NA non-coding upstream 82415 32731914 ~ 32732289 (+)
G2129358 NA non-coding upstream 83129 32731296 ~ 32731575 (+)
G2129357 NA non-coding upstream 85774 32727798 ~ 32728930 (+)
G2129300 NA non-coding downstream 1697 32838135 ~ 32840836 (+)
G2129389 NA non-coding downstream 6645 32843083 ~ 32843293 (+)
G2129307 NA non-coding downstream 17582 32854020 ~ 32854367 (+)
G2129288 NA non-coding downstream 33470 32869908 ~ 32945674 (+)
G2129371 crb1 other upstream 65136 32748928 ~ 32749568 (+)
G2128753 NA other upstream 540324 32269318 ~ 32274380 (+)
LOC110508984 NA other upstream 759049 32053231 ~ 32055655 (+)
G2129639 LOC106598496 other downstream 471660 33308098 ~ 33308991 (+)
G2129708 NA other downstream 595313 33431751 ~ 33432107 (+)
G2129724 LOC106598452 other downstream 615774 33452212 ~ 33452873 (+)
G2129765 LOC106598425 other downstream 735670 33572108 ~ 33575970 (+)

Expression


Co-expression Network