LOC110508999


Basic Information

Item Value
gene id LOC110508999
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32269215 ~ 32274380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471387.2
tgagAAAGTATTTTCGAATAAATTGAATTTTTACATTTCAGTGAAAATAGTCCGGCCATATAAAAGCGCTTGTCCTCCTGCGCGTAGGTCTTTCCAGTCGCATGTTGAAGTTGGAGAAGGATCATGTCTAGCAACTCTCCTGATTACAACAGGCTGCAACGTCATCGCCCAAGCACGGGCAAGACTCTATCCTGCAGAATTGGACCCTGGCTCAGCAGGTATGCTGTGCCTGAGGTCTGGATAAATGTACATGTTTATCCGACCCAGGCGGCATATTCGGATAATCTACAACTGAAAAGATCCAGAAGGGGCTTCTGGCTCTGGGGGACTACATGGGGGCCTGCCATGCCTAATTTGGGCACTAATGTCCGCAAAGAGATGCAGAAGCTGCAGACTGAGTCCCCCCACATTGTGGTGGGAACTCCAGACTGGATGTTTGATGCTTAACAGGTGACGCCTGTGGTCCTCCTGTCAGCCACCATGCCTACTGATGTGCTAGAGGTGACCAAGAAGTTCATGCGAGAGCCCATTGGCATTCTGGTGAAATAAAAGGAATTTCCCTAGAGGGTATTAAGCAGTTCTACATCAATGTAGAGTGAGGAGTGGAAGTTGGACACATTGTGAGACCTGTACGGGATGCCAACAGTTACTCCGGCAGGCATCTTCCTCAACACCAGGAGGATCTGCTGGCTGACTGAGAAGATGCACTCAAGGGGCTTCACGATCTCTGCTCTGCATGGTGACATGGACCAGAAGGAGAGGGATGTCATCATGAGGGAGTTGGCCTGGCTCAAGCAGAGTACTCATCGCTACGGACTTACTGGCTCGGAATTGATGTGCAGCAGGTTCCTTGGTCACCTTCCTACAAAGAGGGAGAATAATATTGAGTGAGAAGTTTGCCTATCTTGACTCAGACTTCTGATATTTGTAAGATATGGTGGTCATGGACAGTTGATTTTAACCTTGAGTTTCTGGTTGAAACCACAAGCTATCAAGACTAAACAATATGGTTCTTACCAGTCATTTATTTCATTGTACAGTTAAGGTGTGTGGTTTTAGGTAGTTGTGGACTGACTGGTATAAGTGGTATTATGTCTGCCAATTATTTTATGGTAAcatactgcatcttgcctatgctgttctgtaccatcactcattcatgtctttatgtacatattctttatccctttacacatgtgtataaggtagtacttttggaattgttaggttagattactcatgcttattactgcactgtcggaactagaagcacaagcatttcgctacactcgcattaacatctgctaaccatgtggatgtgacaaataaatttgatatgATGTGCGGTGTAATGAGTCTGCTCCAATGTTATTGATTTGGCTCACCTGGATATTTTTATTTTGACTTGAGCGTACCAATCACCCTTTGTCAAATCATCAGTGACTATTTTGTGGAATGTTTTTCCTGCTCAACTTGTTTTGTGTGTAGCCATTATCCCTACAACTGAAAGCCTTAATAAAACCAACTCACTGTACTATGA
>XR_002471385.2
gagAAAGTATTTTCGAATAAATTGAATTTTTACATTTCAGTGAAAATAGTCCGGCCATATAAAAGCGCTTGTCCTCCTGCGCGTAGGTCTTTCCAGTCGCATGTTGAAGTTGGAGAAGGATCATGTCTAGCAACTCTCCTGATTACAACAGGCTGCAACGTCATCGCCCAAGCACGGGCAAGACTCTATCCTGCAGAATTGGACCCTGGCTCAGCAGGTATGCTGTGCCTGAGGTCTGGATAAATGTACATGTTTATCCGACCCAGGCGGCATATTCGGATAATCTACAACTGAAAAGATCCAGAAGGGGCTTCTGGCTCTGGGGGACTACATGGGGGCCTGCCATGCCTAATTTGGGCACTAATGTCCGCAAAGAGATGCAGAAGCTGCAGACTGAGTCCCCCCACATTGTGGTGGGAACTCCAGACTGGATGTTTGATGCTTAACAGGTGACGCCTGTAAGTACTCATCAGTGTGGTCCTCCTGTCAGCCACCATGCCTACTGATGTGCTAGAGGTGACCAAGAAGTTCATGCGAGAGCCCATTGGCATTCTGGTGAAATAAAAGGAATTTCCCTAGAGGGTATTAAGCAGTTCTACATCAATGTAGAGTGAGGAGTGGAAGTTGGACACATTGTGAGACCTGTACGGGATGCCAACAGTTACTCCGGCAGGCATCTTCCTCAACACCAGGAGGATCTGCTGGCTGACTGAGAAGATGCACTCAAGGGGCTTCACGATCTCTGCTCTGCATGGTGACATGGACCAGAAGGAGAGGGATGTCATCATGAGGGAGTTGGCCTGGCTCAAGCAGAGTACTCATCGCTACGGACTTACTGGCTCGGAATTGATGTGCAGCAGGTTCCTTGGTCACCTTCCTACAAAGAGGGAGAATAATATTGAGTGAGAAGTTTGCCTATCTTGACTCAGACTTCTGATATTTGTAAGATATGGTGGTCATGGACAGTTGATTTTAACCTTGAGTTTCTGGTTGAAACCACAAGCTATCAAGACTAAACAATATGGTTCTTACCAGTCATTTATTTCATTGTACAGTTAAGGTGTGTGGTTTTAGGTAGTTGTGGACTGACTGGTATAAGTGGTATTATGTCTGCCAATTATTTTATGGTAAcatactgcatcttgcctatgctgttctgtaccatcactcattcatgtctttatgtacatattctttatccctttacacatgtgtataaggtagtacttttggaattgttaggttagattactcatgcttattactgcactgtcggaactagaagcacaagcatttcgctacactcgcattaacatctgctaaccatgtggatgtgacaaataaatttgatatgATGTGCGGTGTAATGAGTCTGCTCCAATGTTATTGATTTGGCTCACCTGGATATTTTTATTTTGACTTGAGCGTACCAATCACCCTTTGTCAAATCATCAGTGACTATTTTGTGGAATGTTTTTCCTGCTCAACTTGTTTTGTGTGTAGCCATTATCCCTACAACTGAAAGCCTTAATAAAACCAACTCACTGTACTATGA
>XR_002471386.2
gagAAAGTATTTTCGAATAAATTGAATTTTTACATTTCAGTGAAAATAGTCCGGCCATATAAAAGCGCTTGTCCTCCTGCGCGTAGGTCTTTCCAGTCGCATGTTGAAGTTGGAGAAGGATCATGTCTAGCAACTCTCCTGATTACAACAGGCTGCAACGTCATCGCCCAAGCACGGGCAAGACTCTATCCTGCAGAATTGGACCCTGGCTCAGCAGGTATGCTGTGCCTGAGGTCTGGATAAATGTACATGTTTATCCGACCCAGGCGGCATATTCGGATAATCTACAACTGAAAAGAAGGGGCTTCTGGCTCTGGGGGACTACATGGGGGCCTGCCATGCCTAATTTGGGCACTAATGTCCGCAAAGAGATGCAGAAGCTGCAGACTGAGTCCCCCCACATTGTGGTGGGAACTCCAGACTGGATGTTTGATGCTTAACAGGTGACGCCTGTAAGTACTCATCAGTGTGGTCCTCCTGTCAGCCACCATGCCTACTGATGTGCTAGAGGTGACCAAGAAGTTCATGCGAGAGCCCATTGGCATTCTGGTGAAATAAAAGGAATTTCCCTAGAGGGTATTAAGCAGTTCTACATCAATGTAGAGTGAGGAGTGGAAGTTGGACACATTGTGAGACCTGTACGGGATGCCAACAGTTACTCCGGCAGGCATCTTCCTCAACACCAGGAGGATCTGCTGGCTGACTGAGAAGATGCACTCAAGGGGCTTCACGATCTCTGCTCTGCATGGTGACATGGACCAGAAGGAGAGGGATGTCATCATGAGGGAGTTGGCCTGGCTCAAGCAGAGTACTCATCGCTACGGACTTACTGGCTCGGAATTGATGTGCAGCAGGTTCCTTGGTCACCTTCCTACAAAGAGGGAGAATAATATTGAGTGAGAAGTTTGCCTATCTTGACTCAGACTTCTGATATTTGTAAGATATGGTGGTCATGGACAGTTGATTTTAACCTTGAGTTTCTGGTTGAAACCACAAGCTATCAAGACTAAACAATATGGTTCTTACCAGTCATTTATTTCATTGTACAGTTAAGGTGTGTGGTTTTAGGTAGTTGTGGACTGACTGGTATAAGTGGTATTATGTCTGCCAATTATTTTATGGTAAcatactgcatcttgcctatgctgttctgtaccatcactcattcatgtctttatgtacatattctttatccctttacacatgtgtataaggtagtacttttggaattgttaggttagattactcatgcttattactgcactgtcggaactagaagcacaagcatttcgctacactcgcattaacatctgctaaccatgtggatgtgacaaataaatttgatatgATGTGCGGTGTAATGAGTCTGCTCCAATGTTATTGATTTGGCTCACCTGGATATTTTTATTTTGACTTGAGCGTACCAATCACCCTTTGTCAAATCATCAGTGACTATTTTGTGGAATGTTTTTCCTGCTCAACTTGTTTTGTGTGTAGCCATTATCCCTACAACTGAAAGCCTTAATAAAACCAACTCACTGTACTATGA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471387.2 False 1540 mRNA 0.44 7 32269215 32274380
XR_002471385.2 False 1555 mRNA 0.44 7 32269216 32274380
XR_002471386.2 True 1549 mRNA 0.44 7 32269216 32274380

Neighbor

gene id symbol gene type direction distance location
LOC110508995 LOC106598827 coding upstream 45875 32201815 ~ 32223340 (+)
si:ch211-13f8.2 LOC106598837 coding upstream 150140 32109770 ~ 32119075 (+)
LOC110508986 LOC106598840 coding upstream 170419 32087652 ~ 32098796 (+)
LOC110508984 NA coding upstream 214262 32053231 ~ 32055655 (+)
LOC110508981 LOC106598847 coding upstream 236355 32029589 ~ 32032860 (+)
LOC110509002 LOC106599181 coding downstream 88658 32363038 ~ 32368915 (+)
LOC110508222 LOC106598808 coding downstream 100311 32374691 ~ 32403493 (+)
nmur1b LOC106599180 coding downstream 306753 32581133 ~ 32589881 (+)
LOC110509005 NA coding downstream 340187 32614567 ~ 32622807 (+)
pfn2l LOC106598797 coding downstream 399365 32631289 ~ 32700844 (+)
G2128792 NA non-coding upstream 1240 32267662 ~ 32267975 (+)
G2128756 NA non-coding upstream 1633 32267056 ~ 32267582 (+)
G2128744 NA non-coding upstream 31316 32186853 ~ 32237899 (+)
G2128668 LOC106598832 non-coding upstream 76436 32157035 ~ 32192779 (+)
G2128693 NA non-coding upstream 177693 32090905 ~ 32091522 (+)
G2128806 NA non-coding downstream 18694 32293074 ~ 32293316 (+)
G2128807 NA non-coding downstream 22412 32296792 ~ 32297047 (+)
G2128809 NA non-coding downstream 23359 32297739 ~ 32298064 (+)
G2128816 NA non-coding downstream 35027 32309407 ~ 32309623 (+)
G2128817 NA non-coding downstream 36028 32310408 ~ 32310764 (+)
G2128614 NA other upstream 320913 31945164 ~ 31948898 (+)
G2128189 NA other upstream 529145 31739312 ~ 31740070 (+)
LOC110508221 LOC106598877 other upstream 625753 31594783 ~ 31643462 (+)
G2127299 LOC106598972 other upstream 1627972 30640687 ~ 30641243 (+)
G2129371 crb1 other downstream 474548 32748928 ~ 32749568 (+)
zbtb41 zbtb41 other downstream 509488 32759166 ~ 32803922 (+)
LOC110509024 LOC106598521 other downstream 783917 33050612 ~ 33070407 (+)
G2129639 LOC106598496 other downstream 1033718 33308098 ~ 33308991 (+)

Expression


Co-expression Network