LOC110508996


Basic Information

Item Value
gene id LOC110508996
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32240882 ~ 32243585 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471383.2
AAATCCCTCCCACGATGAATAGAAGAGTCAACTTCCTCATGCTGAACATAGATTGTCAGACGGACTGGACTCTCTGAACAGAATCTTTCCACATCACAACTCAGTCGGTGCTCTGTCGTCTGAAACAACATCATGCTTTTCCTATTACTTTGTGTTGGATGTGTTGCTTTGTCTGCAGGGCAATCCTTTGCTTCAACACCTACAATGGGACCATGGGCTACCACGACACAGGTGACAACACCTCCAACTCTTACTACCCCTTATGTGGACCCACCTTTTGGTACTAAACCCCTGGAAAGTGGATTTGCAATTCTTCAGGTCGCTGTCCAATCTTATCAGGAGCTAAATGAGACTACAGCTGATCCAGTCTTGAGTCAGATCTACGACATCGTTCGGGCGAAGCGACCTGATCTGAAATTTCGACTGACCGTGAAAACTGTCCAGAAAGTTTGATGGATTATGATCCAAGGCATAGCAGATTGAAGTTCTAGTGGTACATCATGTTCTGCAGATGTGAACTATTGTACTGTATTTTCAATGATTTTATGCTGTTTATCAGTCATTATATTCATGTTAATAATATATTTGAATGTATAATTTCATTGACTTATTGACTTGCTGCGCATTCCAATCACCATCTGGGGGAGGAGCTGTAATTCAAGAGTTATGTCACAACTTTTCCCACTTTCATAGAATCTTGTCATCTGCGTCCAGTGTTTTCTGATGGATTTGATGTTGGACTGAATAGTCCTAACTACTGTAATCTTTTCTTTGGCTATAAACATGTTACAAATGCTGCAACTGTTCTCACACTCATGTTAATTCAACGgatctttttttaaatttcaaaCATAAGGTGACTTCCCTGAAAAGAACAGTCCACCCcaacccccaaaaaatgtatatattatttttttcattCATAAAAAAAATCATGACAATGTGTACAAACTAA
>TU2434272
GGACTGGACTCTCTGAACAGAATCTTTCCACATCACAACTCAGTCGGTGCTCTGTCGTCTGAAACAACATCATGCTTTTCCTATTACTTTGTGTTGGATGTGTTGCTTTGTCTGCAGGGCAATCCTTTGCTTCAACACCTACAATGGGACCATGGGCTACCACGACACAGGTGACAACACCTCCAACTCTTACTACCCCTTATGTGGACCCACCTTTTGGTACTAAACCCCTGGAAAGTGGATTTGCAATTCTTCAGGTCGCTGTCCAATCTTATCAGGAGCTAAATGAGACTACAGCTGATCCAGTCTTGAGTCAGATCTACGACATCGTTCGGGCGAAGCGACCTGATCTGAAATTTCGACTGACCGTGAAAACTGTCCAGAAAGTTTGATGGATTATGATCCAAGGCATAGCAGATTGAAGTTCTAGTGGTACATCATGTTCTGCAGATGTGAACTATTGTACTGTATTTTCAATGATTTTATGCTGTTTATCAGTCATTATATTCATGTTAATAATATATTTGAATGTATAATTTCATTGACTTATTGACTTGCTGCGCATTCCAATCACCATCTGGGGGAGGAGCTGTAATTCAAGAGTTATGTCACAACTTTTCCCACTTTCATAGAATCTTGTCATCTGCGTCCAGTGTTTTCTGATGGATTTGATGTTGGACTGAATAGTCCTAACTACTGTAATCTTTTCTTTGGCTATAAACATGTTACAAATGCTGCAACTGTTCTCACACTCATGTTAATTCAACGgatctttttttaaatttcaaaCATAAGGTGACTTCCCTGAAAAGAACAGTCCACCCcaacccccaaaaaatgtatatattatttttttcattCATAAAAAAAATCATGACAATGTGTACAAACTAAGCTAAACCTTTAACTACTAGCCACATTTATGCAAGCAAGGGGTTTCCCTCCAAAGCTAAATCAATTGGTGTATTAATTTACAACAGAAACATGAAAATTGTTAAGCGTTTTTAATTGAGTGTTCACAAATATCAACGTAAAAAATGTACCATGTACATTTTAGAACGACGTTTGAAACCAAGTCACGTAGGCCTGTTATTATGAACATACAGAACCAGAGGCTCCAGAGAGTGTAgcctacatttattttattttacctgagtagccagcagcataccatcctgcatcccactgaccaggaccaaccctgcttagcttcagaagcaagccagcagtggtatgcagggtggtatgctgctggcaaatgGATATGTATGCAACAACAGTTTAACATTctccttctgctaccatttctatCAAGCCGTCTACGCAGACAGTTTGACGCATACGTTCGATAAATCCAAGGTATAAACCAAGccgaacgcactgcaactgcctctgaaacgcaatgctgcaaggcaaacgcagcgtttcgttggaaatgaatgtaattctggtgtaccaaaatgcaaaaacactgtcggtgtgatcgaAGCATTTAGTCGCATGTCCGGGACACGCATGTCCGGGACACGCATGGTATACATCCTTCAACGAAATGTTTACTTTTAGTAGGGATATACTCTTACCTACAATCCGGTCTTTGAGGCTGCAATAGTTGGCTATCCAAGACTCTGAGATGGCATCACCCGGGTAAAGAACAGAAGTGTCACCTGAGAACATGCAGGAGGCCACAGTGTGTGGAAGGGAAGAATAATTGATGGATTGCTTTGCGATGGAGACAAAATGACCTAAATCCTCACAATATGTCACTTTGACCAAATGTGCTcctggctgaataattttgcac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471383.2 False 955 mRNA 0.39 4 32241792 32243585
TU2434272 True 1804 lncRNA 0.41 4 32240882 32243524

Neighbor

gene id symbol gene type direction distance location
LOC110508997 NA coding downstream 11534 32228406 ~ 32230258 (-)
LOC110508994 LOC106598832 coding downstream 39968 32191802 ~ 32201824 (-)
asip2b agrp2 coding downstream 54273 32062049 ~ 32187519 (-)
LOC110508991 LOC106598834 coding downstream 112421 32119973 ~ 32129371 (-)
tsen15 tsen15 coding downstream 137081 32100303 ~ 32104711 (-)
ccdc39 ccdc39 coding upstream 531 32244116 ~ 32263430 (-)
dcnl1 LOC106598823 coding upstream 20058 32263643 ~ 32267018 (-)
LOC110509000 b3gnt5 coding upstream 37318 32280903 ~ 32292193 (-)
LOC110509001 LOC106598815 coding upstream 68486 32312071 ~ 32332419 (-)
LOC110509003 LOC106598805 coding upstream 218599 32462184 ~ 32514866 (-)
LOC110508982 NA non-coding downstream 212567 32023057 ~ 32029225 (-)
LOC110508978 NA non-coding downstream 226902 32001255 ~ 32014890 (-)
LOC110508977 NA non-coding downstream 278442 31958284 ~ 31967067 (-)
G2128608 LOC106599183 non-coding downstream 306148 31935028 ~ 31935644 (-)
G2129021 NA non-coding upstream 24122 32267707 ~ 32268032 (-)
G2129038 NA non-coding upstream 53608 32297193 ~ 32297394 (-)
G2129041 NA non-coding upstream 61714 32305299 ~ 32305562 (-)
G2129044 NA non-coding upstream 65825 32309410 ~ 32309627 (-)
G2129017 NA non-coding upstream 67291 32310876 ~ 32311370 (-)
G2128568 NA other downstream 358652 31882715 ~ 31883140 (-)
LOC110508968 LOC106598866 other downstream 504300 31708667 ~ 31761665 (-)
G2130393 NA other upstream 1154962 33398547 ~ 33399084 (-)
G2130771 LOC106598333 other upstream 1796621 34040206 ~ 34066665 (-)
G2130780 LOC106598333 other upstream 1797853 34041438 ~ 34068073 (-)
LOC110509052 LOC106598333 other upstream 1797984 34038788 ~ 34058344 (-)
G2131621 NA other upstream 2242284 34485869 ~ 34486176 (-)

Expression


Co-expression Network