ccdc39 (ccdc39)


Basic Information

Item Value
gene id ccdc39
gene name ccdc39
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 32244116 ~ 32263430 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036966476.1
TAACgtgattattttatttaactaggcaagtcagttaagaacaaattcttatttacaatgatggcctacaatGTTAAGTATGTAAGTTGGATAGAAAATAGGCAGGATGGTTTATTGTAAAATAGTAATTCAATTCTAACCTTTTGGTGTGATTCACAAAGTTTTTAGTGGATAAACTGAGTACAGTGACTCCGGTAGCATGCATTGCCAAGTGGTGGTAGTTGTGTGGCCCTCTTGTGACGCGTGCGATTTTATTTTACAACCGGATGATGTGGTAACTAACCACCTGACACGGTTGCTAGGGGCCAGCATTGACAACACGGCGGTTTTGTGTCATGTTATGACCCTTtacaagttgtcaaaaatagaacAAAGTAGCAATTTATTACTTATTGTAAATAATTAGTTGGCATATTGGGCTGGCTTGATATTCAGTTCTAAAACTTGGAATTTAGTCATACAGAAAAAATGTCGAACATACTTTTATCCGAGGTAGGCTGGGACGAGGGCTTTGCCATCCCAGTTGCCAATGCAGAAAATAAAGGTTTGGAAGATGAGCTTCAAATGAAACAAAATCAGAAGTTACAACTGGAGAACAAACTTGGTGGATACAAGGATAGAATACAAGCCATGGCTGAACACCTGACAAATGTTAGGCAGGAGTTATCTCAAACTCAGGCTCTGTGCAAAGCcagggagaaagagactgagtcggagatgcatttcaaggccctggcagagagagaggtgggccgCCTGCGTCAGGAGATTGCACAGCTGGACAACGAGCTTGGAGCTCTGAGGGAGAAGAAGAATGCACAAGAGAACAACATCTTCAAAGCCACCCAGAAGCTGGAAGAGCTGAAAAGCCAGCTGAATTGGGACCAGCAGACCCTGGATGCCTGGCTTGAGGAGTCGGCACACAAGGACGAGGACACCATGGCCATCATCAAGTACGCCCAGCAGGACGAGAGCAGGATACGGGAGCTCACCTTGTTGATAGAGAAGATGACGCTTGAGGCCAACCAAAAGCACAAGGCACTGGACAACGAACTGACTGAAACCATATCAGCACAGATTGGTCTGGATAAGACCGCAGAAAACTTCCGCCAGGCTCACCTAGAGAGACAGGAGCTGATCCACCAGTGGGAGAACACCATCGAGCAGATGAAGAAAAGAGATAGCGAGATGCAGCAGTGTTCAATGCTCCTCACCCAAGTCAACCAGGACatcagagagaggaatggagtgaTCAAGGAGAAGAAGACCTTcctggagagcgagacagagaacaACAAGGAGTACGAGAAGAAGATAGCCATGGCCGACCGGCAGGCGGCCAAGCTGAGACGGGAGTTCCAGGAGCAGGAGAGTAACCGCACCAGACTACAGGATGAGTTGGAGAGTCTGAAAGGGACAGTGGACAGAGCAGCTACTGATGTCGAGTCCATGAGGTCCCAGCTAGCCAACATGAAAAAGGACATCCAGGACAAAAACAACAAGATAAAGGGGGCCAAGCTTCATAACACAGCCCTGGAGGAGAAGCTGAAGACAGTGACTGAGACGACCCTCAGCGTGGAGGAGAGGGCCGCTCAGATGGAGCAAGTACTGAAGGAAGAGGAGCAAACTATCAAAGACATGGACGCCCAGCTGCACCGCCACCGCGAGGTGCTGTTCCGTGAGAGCCAGGAGGTACAGGCCCTGAGGTTGAAGGAGAAAGACTCCATGGCCGTGCTCTCTGGGAGCCGGGTGGCTCTCTCCAACCTGGACAGCCGCCTCAGTAAACTGGACCAGAACTCCCTCAAGCAGCAGGAGATCATCTACAACCAGGACTTCCAGATCCAGCTGCTGGAGAGGAAGATGTTGCGTCTGCGTGGCGAGGTGAACACGGAGGAGAAGCAGGTCCTAGAGAAGAAGGCCCAAAAGCTGGCCCACAGgctggaagagaagaagaggactgCCACCATGCTCACCACCCAACTCAAGAAGCTCCAGGATGATATTCGCTGTGTGAGGAAAGAGGCGGAGAAGACAGGAGCTGAGAAGAGTGACCTAACCACCAAGATCGAGGAGCTGCACCTGTTCAACCACATCTCCGACAAGGAACTGAAGAAGCTCCGGCTCAAGAAGCAGGACACCATGGTGGAGGACAACATCCTGAAGCTGGAGATCAAGCGTCTGCGTGACCTGCTGTACAACAAGGCGGACAGCGTGCTCTCGCTGGAGAAGCGGCGGCTGCAGCTGCAGACGGCCATGAGGGAACGGGAGGAGGAGATTAAAGCTCACCGGGAGATGCTCAACAAGCAGGTCAAGATCACTGACCAGGAGCGCCAAGGACTCAGTGCTGAGGTGCATGAGAGACTGTCCAAGGTCGACAAGATGAGGAAACGCTATGAGATTATGACTGTCTCAATGGCTGCTCCCGAGGGAGAAGAGGAAAAATCACAGGCTTATTATGTGATCAAGGCTGCCCAAGAGAAAGAGGAGCTCCAACGCGAGGGAGACGATTTGGACGCCAAGATCCGCAAGATGGAGAAGGAGATCCGAGCGCTGGAGAACACTCTCCACGTCGTCAACAGCCGCAACACAACCTATCGCAAATCCTTCAACAAAGTGACTGAGTCCAGTGAGGAGTATCAGGAGAAACTGAAGCTGGATGAGCAGAAGAGAGCTGCTGAGGAGAAGTACAAGTACAAGAGGAGGCAGATCCGAGAACTGCAGGAGGACATTCAGGGCATGAACAATACACTCGACAACCTGCTTCAAGAGGAGGCCATTCAGAATGTGAGGACTGAAGAGACCCAGTCACATATCATGTCTCTGAACAGAGAACTGGTTTCCCAGCAGGAGAAACTCCACAGGGTCACTAAGCAGTGCTCCAAACTGACCAAAGAGATCCGGTCGGCCAAGAAGGCCAAGGAGGAGACGTTTGAGGAGAGGGACATTGAGCTGAGGGAGCTGAAGGACTTCAATAAGAATATCAACAAGATGCTGCTGGTTGCCATGGAGGAACAACCTGACCTCAGATCAGCTCTACACATGTACTTTGTCCAGGCCAACTTGCCCCTGCCGTCTCCTGCCTCCACCCCTTCCAGCCGACAGAGCTCAAAGACTAACTCTGCtcgcagctctgtctctctcagGTCAGCTGGGTCTTCAGCCAGCAGCAGCCCAAGGGAGGCGTCAGTGCAGTCTCCCCCTGTTAAGActctggagctgggtctggggTTGTCCGTTACGTCCCCTCCTCTCAACTCTCCACGGGACTCCCATCCACCCAGCTccaccaccagcagcagcagcggtaGCAAGCGCCAGAGCCCATAGAGAAACCCCACAATAGGACAGCCTCACTTACAGCACCAGAAGGCTAATGTGACTGTAGTGCCATTAGGAAAGAGAATGTGTGTCACTGTTCAATGTGTACAACTGTTTGGtgagttgatttgatttgcatgttgttgttttttttacgaACTGGGACAACTTGGCAGTGATTTGAGAAATACACTTAAATAATATATGATTTACCTTTTCTTTGAAGGCACATGTTTTCCATTTGTCAGCTAACCTTTATAGAATTGTATTGTAAATGTGCAtaaaaaatatgtactttttcTAAATTCATTTTGACTCCTGGCAATGTGTTTCTGGATATATCCCAATAAAATAGATGGTTGCTTGTCA
>XM_036966477.1
TAACgtgattattttatttaactaggcaagtcagttaagaacaaattcttatttacaatgatggcctacaatGTTAAGTATGTAAGTTGGATAGAAAATAGGCAGGATGGTTTATTGTAAAATAGTAATTCAATTCTAACCTTTTGGTGTGATTCACAAAGTTTTTAGTGGATAAACTGAGTACAGTGACTCCGGTAGCATGCATTGCCAAGTGGTGGTAGTTGTGTGGCCCTCTTGTGACGCGTGCGATTTTATTTTACAACCGGATGATGTGGTAACTAACCACCTGACACGGTTGCTAGGGGCCAGCATTGACAACACGGCGGTTTTGTGTCATGTTATGACCCTTtacaagttgtcaaaaatagaacAAAGTAGCAATTTATTACTTATTGTAAATAATTAGTTGGCATATTGGGCTGGCTTGATATTCAGTTCTAAAACTTGGAATTTAGTCATACAGAAAAAATGTCGAACATACTTTTATCCGAGGTAGGCTGGGACGAGGGCTTTGCCATCCCAGTTGCCAATGCAGAAAATAAAGGTTTGGAAGATGAGCTTCAAATGAAACAAAATCAGAAGTTACAACTGGAGAACAAACTTGGTGGATACAAGGATAGAATACAAGCCATGGCTGAACACCTGACAAATGTTAGGCAGGAGTTATCTCAAACTCAGGCTCTGTGCAAAGCcagggagaaagagactgagtcggagatgcatttcaaggccctggcagagagagaggtgggccgCCTGCGTCAGGAGATTGCACAGCTGGACAACGAGCTTGGAGCTCTGAGGGAGAAGAAGAATGCACAAGAGAACAACATCTTCAAAGCCACCCAGAAGCTGGAAGAGCTGAAAAGCCAGCTGAATTGGGACCAGCAGACCCTGGATGCCTGGCTTGAGGAGTCGGCACACAAGGACGAGGACACCATGGCCATCATCAAGTACGCCCAGCAGGACGAGAGCAGGATACGGGAGCTCACCTTGTTGATAGAGAAGATGACGCTTGAGGCCAACCAAAAGCACAAGGCACTGGACAACGAACTGACTGAAACCATATCAGCACAGATTGGTCTGGATAAGACCGCAGAAAACTTCCGCCAGGCTCACCTAGAGAGACAGGAGCTGATCCACCAGTGGGAGAACACCATCGAGCAGATGAAGAAAAGAGATAGCGAGATGCAGCAGTGTTCAATGCTCCTCACCCAAGTCAACCAGGACatcagagagaggaatggagtgaTCAAGGAGAAGAAGACCTTcctggagagcgagacagagaacaACAAGGAGTACGAGAAGAAGATAGCCATGGCCGACCGGCAGGCGGCCAAGCTGAGACGGGAGTTCCAGGAGCAGGAGAGTAACCGCACCAGACTACAGGATGAGTTGGAGAGTCTGAAAGGGACAGTGGACAGAGCAGCTACTGATGTCGAGTCCATGAGGTCCCAGCTAGCCAACATGAAAAAGGACATCCAGGACAAAAACAACAAGATAAAGGGGGCCAAGCTTCATAACACAGCCCTGGAGGAGAAGCTGAAGACAGTGACTGAGACGACCCTCAGCGTGGAGGAGAGGGCCGCTCAGATGGAGCAAGTACTGAAGGAAGAGGAGCAAACTATCAAAGACATGGACGCCCAGCTGCACCGCCACCGCGAGGTGCTGTTCCGTGAGAGCCAGGAGGTACAGGCCCTGAGGTTGAAGGAGAAAGACTCCATGGCCGTGCTCTCTGGGAGCCGGGTGGCTCTCTCCAACCTGGACAGCCGCCTCAGTAAACTGGACCAGAACTCCCTCAAGCAGCAGGAGATCATCTACAACCAGGACTTCCAGATCCAGCTGCTGGAGAGGAAGATGTTGCGTCTGCGTGGCGAGGTGAACACGGAGGAGAAGCAGGTCCTAGAGAAGAAGGCCCAAAAGCTGGCCCACAGgctggaagagaagaagaggactgCCACCATGCTCACCACCCAACTCAAGAAGCTCCAGGATGATATTCGCTGTGTGAGGAAAGAGGCGGAGAAGACAGGAGCTGAGAAGAGTGACCTAACCACCAAGATCGAGGAGCTGCACCTGTTCAACCACATCTCCGACAAGGAACTGAAGAAGCTCCGGCTCAAGAAGCAGGACACCATGGTGGAGGACAACATCCTGAAGCTGGAGATCAAGCGTCTGCGTGACCTGCTGTACAACAAGGCGGACAGCGTGCTCTCGCTGGAGAAGCGGCGGCTGCAGCTGCAGACGGCCATGAGGGAACGGGAGGAGGAGATTAAAGCTCACCGGGAGATGCTCAACAAGCAGGTCAAGATCACTGACCAGGAGCGCCAAGGACTCAGTGCTGAGGTGCATGAGAGACTGTCCAAGGTCGACAAGATGAGGAAACGCTATGAGATTATGACTGTCTCAATGGCTGCTCCCGAGGGAGAAGAGGAAAAATCACAGGCTTATTATGTGATCAAGGCTGCCCAAGAGAAAGAGGAGCTCCAACGCGAGGGAGACGATTTGGACGCCAAGATCCGCAAGATGGAGAAGGAGATCCGAGCGCTGGAGAACACTCTCCACGTCGTCAACAGCCGCAACACAACCTATCGCAAATCCTTCAACAAAGTGACTGAGTCCAGTGAGGAGTATCAGGAGAAACTGAAGCTGGATGAGCAGAAGAGAGCTGCTGAGGAGAAGTACAAGTACAAGAGGAGGCAGATCCGAGAACTGCAGGAGGACATTCAGGGCATGAACAATACACTCGACAACCTGCTTCAAGAGGAGGCCATTCAGAATGTGAGGACTGAAGAGACCCAGTCACATATCATGTCTCTGAACAGAGAACTGGTTTCCCAGCAGGAGAAACTCCACAGGGTCACTAAGCAGTGCTCCAAACTGACCAAAGAGATCCGGTCGGCCAAGAAGGCCAAGGAGGAGACGTTTGAGGAGAGGGACATTGAGCTGAGGGAGCTGAAGGACTTCAATAAGAATATCAACAAGATGCTGCTGGTTGCCATGGAGGAACAACCTGACCTCAGATCAGCTCTACACATGTACTTTGTCCAGGTCAGCTGGGTCTTCAGCCAGCAGCAGCCCAAGGGAGGCGTCAGTGCAGTCTCCCCCTGTTAAGActctggagctgggtctggggTTGTCCGTTACGTCCCCTCCTCTCAACTCTCCACGGGACTCCCATCCACCCAGCTccaccaccagcagcagcagcggtaGCAAGCGCCAGAGCCCATAGAGAAACCCCACAATAGGACAGCCTCACTTACAGCACCAGAAGGCTAATGTGACTGTAGTGCCATTAGGAAAGAGAATGTGTGTCACTGTTCAATGTGTACAACTGTTTGGtgagttgatttgatttgcatgttgttgttttttttacgaACTGGGACAACTTGGCAGTGATTTGAGAAATACACTTAAATAATATATGATTTACCTTTTCTTTGAAGGCACATGTTTTCCATTTGTCAGCTAACCTTTATAGAATTGTATTGTAAATGTGCAtaaaaaatatgtactttttcTAAATTCATTTTGACTCCTGGCAATGTGTTTCTGGATATATCCCAATAAAATAGATGGTTGCTTGTCA

Function

symbol description
ccdc39 Involved in cilium-dependent cell motility and epithelial cilium movement involved in determination of left/right asymmetry. Acts upstream of or within determination of left/right symmetry. Located in extracellular region. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 14. Orthologous to human CCDC39 (coiled-coil domain containing 39).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007368 determination of left/right symmetry biological_process

KEGG:

id description
K23729 CCDC39; coiled-coil domain-containing protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036966476.1 False 3687 mRNA 0.50 20 32244116 32263430
XM_036966477.1 True 3598 mRNA 0.49 19 32244116 32263430

Neighbor

gene id symbol gene type direction distance location
LOC110508996 NA coding downstream 531 32240882 ~ 32243585 (-)
LOC110508997 NA coding downstream 13858 32228406 ~ 32230258 (-)
LOC110508994 LOC106598832 coding downstream 42292 32191802 ~ 32201824 (-)
asip2b agrp2 coding downstream 56597 32062049 ~ 32187519 (-)
LOC110508991 LOC106598834 coding downstream 114745 32119973 ~ 32129371 (-)
dcnl1 LOC106598823 coding upstream 213 32263643 ~ 32267018 (-)
LOC110509000 b3gnt5 coding upstream 17473 32280903 ~ 32292193 (-)
LOC110509001 LOC106598815 coding upstream 48641 32312071 ~ 32332419 (-)
LOC110509003 LOC106598805 coding upstream 198754 32462184 ~ 32514866 (-)
cpdp LOC106598802 coding upstream 334998 32598428 ~ 32614539 (-)
LOC110508982 NA non-coding downstream 214891 32023057 ~ 32029225 (-)
LOC110508978 NA non-coding downstream 229226 32001255 ~ 32014890 (-)
LOC110508977 NA non-coding downstream 280766 31958284 ~ 31967067 (-)
G2129021 NA non-coding upstream 4277 32267707 ~ 32268032 (-)
G2129038 NA non-coding upstream 33763 32297193 ~ 32297394 (-)
G2129041 NA non-coding upstream 41869 32305299 ~ 32305562 (-)
G2129044 NA non-coding upstream 45980 32309410 ~ 32309627 (-)
G2129017 NA non-coding upstream 47446 32310876 ~ 32311370 (-)
G2128568 NA other downstream 360976 31882715 ~ 31883140 (-)
LOC110508968 LOC106598866 other downstream 506624 31708667 ~ 31761665 (-)
G2130393 NA other upstream 1135117 33398547 ~ 33399084 (-)
G2130771 LOC106598333 other upstream 1776776 34040206 ~ 34066665 (-)
G2130780 LOC106598333 other upstream 1778008 34041438 ~ 34068073 (-)
LOC110509052 LOC106598333 other upstream 1778139 34038788 ~ 34058344 (-)
G2131621 NA other upstream 2222439 34485869 ~ 34486176 (-)

Expression


Co-expression Network