G2100154


Basic Information

Item Value
gene id G2100154
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 7214747 ~ 7219258 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2402217
TCCAGATAGTCGAGAGACAGATTTATATGTACCTCTCCTACAAGTAAAGTTGCTGTGTGACTGGGTGAAATGGATTGAACACTTAGAGAATATATGCTAGAATATTATAGATACTTCCTATATCCTACACAACTATATCTACACTATTTAAAAATCAACAGTCATTTTACTCTGTCAGGCATGGCAGAAGAAACAGACAAGAttacatgatatatatatatatatagtatgtacagTTCTGTTCTCCAAAGCCAAGGGTCCAAGCACTATTTGCAACAGGAAGTGGAACAGTATTTAGGATTTAGCATACTTCCATATCTCCATTGAATTAGAATTGTGATTTTGAGATTAGAACCTTTCTCCTgtaactgtttgtgtgtgtgagtgtggataACCTTCAGGTGGAGCGATGGAGTTCAGCACCCATTCCGAGGTTTCTCCAGCAATACTTAGACTATATAAAAGGTTCCAAACTTAACGAGGCTATATCGCCAGGATGAAGTGAAGCTTTGACATTGTAGACTTGACCAACAAAATACTTTACTACAATGAAACAAACAAATAGAGAGACAAACGGAGAAGCCacaatgtgtgtgtttctcataATGGTCTTGAGTCGCTCCACACAACAACCTGAAATGGCTGTTATTTGAGGTTGCGCAGTGACTCCTTAGGAAGGTACACTTTGGTACATGTATTACATCATAATAACTTTGAACATAACattggagattagaaacctaggaATGAGTGCTGGTCAGACTGTAAAGTATCCCTCCTCCCACTCCTGAGGTTTGAATCCTATTCTTCAACGGCATTTATCTGAGTAGAACTAatgcacaaaacaaaaacaaaagatTCCTTTAATTAGTCCTTCATTTACATTTCAAAATATACATGATCTGAGTTACTACAAGATCAAAATCACCTGAGGTAAGTCTCTCTGTATTCACCTACATCGGTTCTTAAGGACAGGAGTCAGTGTTTTTAATGGCAGTTGGTTTCACTCAGTCCCATGGCTAGCATCTATTGCATCCATTTCTCTCCATACaggtgtgagtgagtgtttggCAAGACCAGGCATGCATACTGTAGATTAAACATGCTAAACTCACAAGAAAATAAAACAGTtttgcttgagagagagagagaattgatcCATCTCTTCAAAGTAATCATCAGTCTTACAGAAAGAGATACAGTAATGGTTCTCTTTCAATTATTCTTTTCGATATCTCAAATGTGGGGTTTCACTAGGACCAGCTACTCTCTTGGAAGTACCTATCCAAAGCTtttgttggagacagacaggtagagtggtGAATGAGGTGAGACCCTAACTTCAATAAAATTCATTTTCTACTTCTCAGTCTCTGTTGGTACTGTAGCTAGCGTCACTGCTAGCTATTGAGACTTGGCTAGCTTGCTGAGAAGCAAGGTAGCAACACGGTAGCATTACTAGCTCCCTTATCTCATCTAGTTTAACCTACATTCACCCATTCTGTTAACTAGACCAACCCTCACAGCCTTCTCGTCGGTTGCTGAGCACTCTTTCTGAAGGCTAACTCAGTCACACGGTTTCCTTTAGCCAGCACTGAGCTAGCCATGGCACATCTTCACCACAAggtagctgctagctagctaacactccACTAGCCTCGTGGCTATAGCGTTATACAGTGGTCAATATTGCTAGCTGTTAGCCGCAAAGCTCCTAACTAGCTAGCCCATGCCATCTACATCTATGTTGTTCTTTCAACAGACATTGCTTGGTCCCACTAGCAAGCCTTGTCCCTCACAATGGCCACTGCTATCCCTTTCCAGAACGAGGCCTAGCACTCGAACCCCCAAGTTCTTGCGGCTCCAAGATTGTGGGGAAAGAGTACCACCCTCTATGCATCAATTGATTGGGACCCTGAATCATATGACCACTGCAGACTGCTGACGAGGGCAGGTCTGAAGAGGAGGCTTAAACGTGCTTCTATTTCGATATCCCGTCTGGCCTCCGAGCCAACAGTGACAGCCGAGGCTCAGCACTCCGCAACTGAGCCAAGTTGGAGCGAGGTCATGGATAGCCTCGACTCCCTGCCCTCACTGTCTGATGACACAGTGTCAGGGGAAGGCGAGTTAGGCGATGACGAGGATGACAATGGGATTCATCTCACAGAAATCCTTGAGATAGCGCAGGAGATGGGGACTGCTGGTGAAACTTAGCTTGTCgtttttaattattttgtttCAATCCTGTCCCAAaccagagccctaaccttatccaCTCTGAATGAACCCCTAAACTAGTACCCTTTGAGTTGAGTTGTTTCTGGTAAACACGGTGACCACGCCGTTTGGGGTGGAAGAGGTGACACATCCAGGAGAAGAGGGTGATGCCGTATGCTTTCCCTCCTCATCTGCGAGCCCTTGATGACCAGCGTTTTTCCCATCGGCAGTTATAACCCTGCTCACCAAGATGCTTTAGCCTTCTGGGCGTAGccggttaaaaaaaaaaaagaaaaaaggagaTGATACAGGCCACTTATGCACGCTCTCTGTTTTTACCGTTGGTGCGTTTATGTCGTGGAGAAGTGGTGTGACTATACAGATTTTTCATCTCTACACTCTGCTTTCCAGGGTCCTATGCTCCTGGTAGGAGAAGGTCTATCTTTGTTAGGGTCCTTTTGCCGCTTTCTCGGCCTGCCAAGGTCCCGCCAGTGACACAGTTTATCCATAACTGTTGGGTAGTCTCTATGGTGGACACGTCGCTTACGTCCATTCGCCAAGCTTTTAGCTGTCTGTGTCTATTGTGCTTAAAATCCTTTCACAGCAGCTATTAGCCAATTAAAAGCATTGTGACATAATATTCCTCCTTTTGCTTTACTACTGCCCTTGGTGTCCCTAAGCGTATGTGTGAACAGTGCTCTACAAGCCACTGTTCGCACCCACAGTCTGTCCAGGTGGTTTTCAGGTTAATGTACTTAACCCTGTCTTTGGGCGGGGTCAACTTTTTTCCATTGTCACACCTTGGAGCCTGTGGCTTTTTGCCTGTCTCCTTCCCTAGAAGGGCATCCCTGTCGTTTCCCCGATGTTCCCCGGACATTCCCCCTTCGTTTCCCCGTCAATTCCCAGTCGCTTCCCAATAAGTGTGGTTCACATCTACTTGGATTATAGGAGAGCTCAGGCAAGGCTGTCATGCTCTTCGCTCATTTCAACGATATCCTGCCAGATCATGGGGACCATTCTTTTGGCTGATGGCCTTCTGAGGTCCCTCTCCTACATAGGAGTTTACCTCCCGGACACTGTTTGGGGCATATCTCATTAGATTGAGGTTGTATGCGTCTAGCTTCCCCTCACTTTGTTATGAGATTTTTCCCCTTGGGTTGTCTGTGCACCTTTTTGGTGCATACTCCCTTGGTTTCGGGACCTCTGAGGGTTGCTGATGTTGGGACTTCCCTGGCTTTGGAGAGCATGTTTTGCGATATGGGAGTTGGCAATATCCCCACATGTGAGATATCGAAACGAGTAATTGAAAGAGAACTTACTTGCTTAACCCCAGTTCTCTGAAATGATGAGTAATGGTAAGCGTTTGTACTTTCATTGTGCCAAAAAAAGTACACAGTTACAGTCATTCCCTGTTCTAGATCAGGCTGGTCACTAGAAGTAGACAGGGATTTCAGATGTTTGAAAAGTTCCTGAGTATTTATGCCTTCCTCAGCACTcacaaaaagaaagaaaaacaatttCCCAGCACTGGGTGGAAAATCATTTCTTAaaattgaactaggcaagtcagttacttTTAATTACAACGACGccctacagtgggttaactgccttgttcaggggaagaacgacagatttgtaccttgtcagctcagggattcaatccagtaacctttcgtttactggcccaacagtCTAACACTGCTGCCTCATGAGGTTTGCAGCTGGAGCGTGCTGCTTAGACCACTGACAGTTCTCAATGCTATAGCAAGCCGTGAATACTGATGATACCTAGTGTGTtgctttaaaacatttttttttaagccTTCCCCATACCGTAGCAAAATCTTAACAACTCTGAAGTAATGCCTAAACTGTTAACCTTTGAATTAATGttgttttaaccctgtaaccacacggaaTGAATGCATTAAAAATAGATGTTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2402217 True 4165 lncRNA 0.44 2 7214747 7219258

Neighbor

gene id symbol gene type direction distance location
LOC110508412 NA coding downstream 162374 7039094 ~ 7052373 (-)
LOC110508409 LOC106599985 coding downstream 198275 6985437 ~ 7016472 (-)
LOC110508405 LOC106599977 coding downstream 388129 6817234 ~ 6826618 (-)
LOC110508403 LOC106599971 coding downstream 414933 6752808 ~ 6799814 (-)
LOC118944892 NA coding downstream 509768 6704861 ~ 6704979 (-)
LOC110509205 LOC106599992 coding upstream 7049 7226307 ~ 7253057 (-)
LOC110508422 LOC106600004 coding upstream 192506 7411764 ~ 7504744 (-)
LOC110508425 LOC106600009 coding upstream 319931 7539189 ~ 7564681 (-)
sirt6 sirt6 coding upstream 389976 7609234 ~ 7619567 (-)
ub2r1 ub2r1 coding upstream 408654 7627912 ~ 7629740 (-)
G2100108 NA non-coding downstream 1229 7207468 ~ 7213518 (-)
G2100036 NA non-coding downstream 121228 6994966 ~ 7093519 (-)
G2100024 NA non-coding downstream 238848 6975135 ~ 6975899 (-)
G2100023 NA non-coding downstream 242545 6971948 ~ 6972202 (-)
G2100156 NA non-coding upstream 2030 7221288 ~ 7222126 (-)
G2100163 NA non-coding upstream 12263 7231521 ~ 7231744 (-)
G2100204 NA non-coding upstream 54583 7273841 ~ 7274059 (-)
G2100321 NA non-coding upstream 158127 7377385 ~ 7377674 (-)
G2100109 NA other downstream 8259 7203606 ~ 7206488 (-)
G2099318 NA other downstream 775651 6426170 ~ 6439096 (-)
G2098997 NA other downstream 976134 6238169 ~ 6238613 (-)
G2098996 NA other downstream 976653 6237433 ~ 6238094 (-)
G2098793 NA other downstream 1215253 5995825 ~ 5999494 (-)
G2100707 NA other upstream 374036 7593294 ~ 7593815 (-)
LOC110508434 LOC106600027 other upstream 549158 7767544 ~ 7837267 (-)
LOC110508443 LOC106600051 other upstream 774153 7993411 ~ 8044009 (-)
G2101243 NA other upstream 938961 8158219 ~ 8158518 (-)
G2101464 NA other upstream 1018886 8238144 ~ 8239853 (-)

Expression


Co-expression Network