G2161705


Basic Information

Item Value
gene id G2161705
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 19857610 ~ 19857903 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2471292
gtccgggatcaattcacCTACTTGGGAGTTAAAGTGTcaaggaaatattcaaatttgtttcaggaaaactttgttgctctagcagacagtttgaaacaatcttttactttttggaattcactacccctttctcttatcggaaggattaatgtcattaaaatgaatgtgttgcccaaatttttatatttatttcaatgtttacccatttttattctaaaatctttttttatttcactggatcaaacattcatgcattttatttgggatggcaaggtacttttctctatcaggccc

Function

NR:

description
Retrovirus-related Pol polyprotein LINE-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2471292 True 294 lncRNA 0.33 1 19857610 19857903

Neighbor

gene id symbol gene type direction distance location
LOC110509777 NA coding upstream 8460 19847023 ~ 19849150 (+)
LOC110509774 LOC106563307 coding upstream 12795 19839666 ~ 19844815 (+)
LOC110509364 LOC106563314 coding upstream 50756 19805362 ~ 19806854 (+)
LOC100136690 LOC100136690 coding upstream 181197 19673166 ~ 19676413 (+)
slc30a5 slc30a5 coding upstream 185303 19666183 ~ 19672307 (+)
fbxw5 LOC106563306 coding downstream 2490 19860393 ~ 19873346 (+)
LOC118936353 NA coding downstream 46881 19904784 ~ 19908478 (+)
LOC110509779 coq4 coding downstream 63699 19921602 ~ 19928559 (+)
zmynd19 LOC106563301 coding downstream 99002 19956905 ~ 19969792 (+)
LOC110509781 LOC106563300 coding downstream 111954 19969857 ~ 19977843 (+)
G2161680 NA non-coding upstream 57348 19799645 ~ 19800262 (+)
G2161679 NA non-coding upstream 58101 19798090 ~ 19799509 (+)
G2161656 NA non-coding upstream 68478 19788899 ~ 19789132 (+)
G2161601 NA non-coding upstream 168464 19688873 ~ 19689146 (+)
G2161667 NA non-coding downstream 15771 19873674 ~ 19874296 (+)
G2161661 NA non-coding downstream 22000 19879903 ~ 19880306 (+)
G2161662 NA non-coding downstream 47992 19905895 ~ 19928468 (+)
G2161719 NA non-coding downstream 76538 19934441 ~ 19934770 (+)
G2161720 NA non-coding downstream 77092 19934995 ~ 19935329 (+)
G2161678 NA other upstream 59836 19795260 ~ 19797774 (+)
G2161635 LOC106563312 other upstream 104867 19741814 ~ 19752743 (+)
LOC110509766 LOC106566689 other upstream 241099 19609602 ~ 19616511 (+)
LOC110509753 LOC106563373 other upstream 720042 19136428 ~ 19138160 (+)
LOC118945267 NA other upstream 788826 19066137 ~ 19068784 (+)
LOC110509811 LOC106563272 other downstream 1340015 21160126 ~ 21389662 (+)
G2163804 LOC106613263 other downstream 1742515 21600418 ~ 21601052 (+)
G2165628 LOC106563266 other downstream 2979168 22837071 ~ 22841481 (+)
G2165973 LOC106563265 other downstream 3267877 23125780 ~ 23134290 (+)
LOC110509345 LOC106563260 other downstream 3657719 23468400 ~ 23534217 (+)

Expression


Co-expression Network