G2165973 (LOC106563265)


Basic Information

Item Value
gene id G2165973
gene name LOC106563265
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 23125780 ~ 23134290 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2475799
ctttactcagtactttgttgaagcacccttggcagcaactttgagtcttcttgggtatgatgctacaagcttggcacacctgtatttgggtatgatctcccattcttctctgcagatcctctcaagctctctcaggttggatggggagcgtagctgcacagatattttcaggtctctccagagatgtttggtagggttcaagtccggactctggcaggaccactcaaggacattctgagacttgtctcaaagccactcctgggttgtcttgactgtgtgcttacggtcattgacctgttggaaggtgaacctttgccccagtctgaggtcctgagcgctctggagcaggttttcatcaaggatctctctgtactttgctccgttcatctttctcttgatcctgactagtcttccagtccctgccgctgaaaaacatccccactgcatgatgctgccaccaccattgttcaccgtagggatgatgccagatttcctccagacgtgacgcttggcattcaggccaaagtgtttaatcttggtttcatcagagcagattatcttgtttctcatggtcagcgtcctttaggtgccttttgacaaactccaaggaggctgtcatgtgcattttactgaggagtggcttcagtctggccactctaccataaaggcctgattggtggagtgctgcagagatggttgtccttctggtaggttctcccatctccacagaggaactcagatgctctgtcagagtgaccatcgggttcttggtcacctccctgaccaaggcccttctcccccgattgctcagtttggctgggagaccagctttaggaagagtcttggtggttccaaacttcttccattgaagaatgatggaggccactgtgttcgtggggaccttcaatgctgcagaaatgttttggtacccttccccagacctgtgccttgacacaacACTGTCTCGGAGCGCCAAGAAGAATTCCTTTGACCTGTTGGCTtcgttttttctctgacatgcacagtcaactgtgggaccttatatagacaggtgtgtgcctttccaaatcatgtccactcaatttaatttaccacaggtggactccaatcaagttgtagaaaaggatgataaatggaaaaaggatgcacctgagctgaatttagaatcgcatagcaaagggtctgaatacttatgtaaataagtaaatAATTTTGTTTTAAATGagcaaaaacctgttttcactttgtcattatgtggtattgtttgtagattgatgagttttaaaaatatttgtatcaattttagaataaggctgtaatgtaacgaaatgtggaaaaagggaaggggtctgaacttCCCGAATGCATTGTAACTCAAGTGAAacggaatgaaagagagaaacaaaaaaaTAAGGTATCTGACTAGCTCACCAGAATAACCCATTCTCATGCTTGTGCTTAACAATCCGACATCTACATAAATTAAGAGGTAGCCTTTTCCCAATCTTTCCTGACTCATATAAAGACAGATACCCCTTGGTATTGGAGGAGAACATTGGATATTTTAGCTTTGTTGATCTGTCTGAAATCTTCAAATCTGACAAGGTGTCTTCCAGCCAcccatatacagtaatataatttTAATTAAAACTACAGTCAATGTGATAGAACAGGTGTCAGTCCAGAATCTATCTCTAAATTGCCTACAATAAGGGGCCCTGACATTTCCAATCATAACAACTGTGGATATCGAGAGACAAAAACAGTTTCTCTAATAATGTTTTTAAAAGTCAATCTTTTGTCTCTTTTTTTTCACTGACTGACTCTTATTGTGCCGCCATCAGAGGCACAATTTATTGAGAAGAATGCAATGAATTTCCTGTTAGTTCTTAGGGGATATGCTTTGTTTTTCCTGTTGCTGGGAGCCGGGGTCTTTTTTTTTCACCCTCGCTGACTTTCCGTCTGGAACTTTTGCTGGGAGGCTAGAGAGGTGAATGTTAGGTGCCTGGACTAGACTAGAGTCGCCCCCCACCCTCCCATTCCTGCTCCTCCCACCCCTTCCCGCCCCCGACCTCACCACTTTCAGGTGGGGTTACGGGTGAGAGCGGGTGCGTGTTTGTGGTGTGACTAAAGAGAGGGGGGTAATGCTTTGTTAAGCATGGTGAAAGAGCGACCAAATAGCACAAGGCCCCTCGGGGTGTCGGAAAGGGGAGACGGTGGTGATGATGATCTCATGCCATGCTGCTGGTTGGCGTGCTCTGAGTGCTGCCAATGCTGGCATTAGCACTACTGTTCTCAGAGGGGGAGGGGTTCGTAGAAACGGGTTGCCGTTTGCTGGTCAGAGAGCAAGGACATCCTGAGAGGTTTACTGCAGTCGACCCGACATCCAGTCCGGTGGGGTATCCTGTGCGGATCTTGATGAACCACAGAGCTCCAATAAGCAGAACTCCGATCAGGAAGCCTCCAAAAGCAATGCCCAGCACGGCTGACAGACCAAAGTCAATACACACAGTTGGTGGTGGGATGTATGTCTGGGTGACCTCCAAATTCCTCTTCactcttcctccatctccacaTTTctcACTGAAGCAGAGTTTGACGGAGCACTCCAGGTCCCAGCTAGTGGACGCCAGGTCATGGAGCAGCTCTAGGGAGAAGCTAACCCTGGTACTGTTGGGGCACATGGTGGAGGAGCACATCTCTGACCTGAAGGGCATGTCTCTGACTACCGGGCATGAGCCCTTGGAGCGCACCGAGCAGTTGATCACCTCGATGGTCAGCACAATCTCCCCCAGCATCCT

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2475799 True 2801 TUCP 0.47 5 23125780 23134290

Neighbor

gene id symbol gene type direction distance location
trim32 LOC106563269 coding upstream 1135539 21985765 ~ 21990241 (+)
LOC118945260 NA coding upstream 1150800 21963673 ~ 21974980 (+)
pappaa LOC106563270 coding upstream 1250709 21749280 ~ 21875071 (+)
LOC110509813 LOC106563271 coding upstream 1416823 21670528 ~ 21708957 (+)
LOC110509811 LOC106563272 coding upstream 1736118 21160126 ~ 21389662 (+)
LOC110509823 LOC106563263 coding downstream 177346 23311636 ~ 23325364 (+)
LOC118945326 NA coding downstream 245615 23379905 ~ 23382422 (+)
LOC110509824 LOC106563262 coding downstream 271713 23406003 ~ 23408940 (+)
LOC110509825 LOC106563261 coding downstream 277252 23399671 ~ 23465618 (+)
LOC110509345 LOC106563260 coding downstream 334110 23468400 ~ 23534217 (+)
G2165972 NA non-coding upstream 172 23123195 ~ 23125608 (+)
G2165617 NA non-coding upstream 296758 22828800 ~ 22829022 (+)
G2165587 NA non-coding upstream 313994 22811577 ~ 22811786 (+)
G2165575 NA non-coding upstream 319499 22805944 ~ 22806281 (+)
G2165560 NA non-coding upstream 331309 22794201 ~ 22794471 (+)
G2166008 NA non-coding downstream 25782 23160072 ~ 23181710 (+)
G2166007 NA non-coding downstream 47693 23181983 ~ 23191941 (+)
G2166020 NA non-coding downstream 58745 23193035 ~ 23196885 (+)
G2166066 NA non-coding downstream 125878 23260168 ~ 23261360 (+)
G2166030 NA non-coding downstream 133590 23267880 ~ 23361214 (+)
G2165628 LOC106563266 other upstream 284299 22837071 ~ 22841481 (+)
G2163804 LOC106613263 other upstream 1524728 21600418 ~ 21601052 (+)
G2161678 NA other upstream 3328006 19795260 ~ 19797774 (+)
G2161635 LOC106563312 other upstream 3373037 19741814 ~ 19752743 (+)
LOC110509837 LOC106563250 other downstream 651329 23785060 ~ 23793640 (+)
LOC110509859 LOC106563234 other downstream 1366118 24500361 ~ 24532163 (+)
LOC110509866 LOC106563223 other downstream 2065329 24944825 ~ 25202836 (+)
LOC110509876 LOC106563358 other downstream 3329011 26463263 ~ 26464615 (+)

Expression


Co-expression Network