bloc1s2 (bl1s2)


Basic Information

Item Value
gene id bloc1s2
gene name bl1s2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 27010229 ~ 27023274 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599322.2
GTCACGTGGAACTCCATCATGTGACTGGCGGAAAGGCAAAATGGCGGCCACGGGAGAGGAGGCTGCTGCGATGGATAGCATCTCCAGAGTACCCCCTGTCCATCCTACCGTCCTCAGCCTGGGAGGGAGCTCCGAACCCCGGGGAGAGCCTAGCGAGACTGCTGCTGACGGCCAGGTTGTGCCCGCGGCGCCCAAGAAGCCTACCAGCAGCAgtgacGGTGGGGTGGAGACTGCAGAGGAGGCTGTAGAACCAGACATCAATGAGCTCTGTACAGACATGTTCGATAAGATGGCGGTCTTCCTACAAGGAGAACTCACAGGCACCTGTGAGGACTACCGTCTGCTGGAGAATATGAACAAGCTGACCAGTCTGAAGTACATGGAGATGAAAGACATCAGCATTAATATCAGCAGGAACCTGCAGGACCTCAACCTCAAGTACGCCAGCCTCCAGCCCTATCTAGACCAGATAAACCAGATTGAGGAACAAGTGTCGTCTCTGGAGCAGGCTGCTTATAAACTGGACACCTACTCCAAGAAGCTTGagGCCAAATTCAAGAAACTGGAGAAGCGATGATGAGGAGTAAATATGGAAGAAGATTATatggaaaggaggaagaggaggcctgAGGGGGtactggtcctcctcctccccgtcTGTTAACCCTTTTGATCTGAGGAAGCACACCCACATCTTTACAACACCAGCCTTATATAGAGAGATATGAGGTAGCCTGGGGTTGGTTGGAGGGATATCCCAGATGTTAGACCTAGTATTATCATTTTTGTTGGATCATTAAAGTTGCTTGTCCATGGGGCTTTGGGTAGTTTGAGTCCATATTCCTGTTAGCAACATTCCAGGCCGCTCTGTGTCGTCCTGTCACTATGACTATTTACTTCCTGGATTTAGTGAATTGACCCCTACCTTGGTGCGCACTACCCTAGAATCAGCAACCTCCTTCTAACCTTGAAGGTACACAGCTAAGAAGATGACAACCAAATTCACTTTTCTACTGATGGACTTTAGCttctttaaatgttttcctctgcTGGCATCATGAACTGAATTCAAACCTTTTTTATGACCTTTATAATACTTATTTGCTTGTGTATACTAATGTCCCTTAAAAGCATTGACATACATGTTTGATTGCAGCATGTGTACAATGTATCTTCTAAAAACATTAACTAATAATAATAAATCTGTGAAGGAAA

Function

NR:

description
biogenesis of lysosome-related organelles complex-1 subunit 2-like

GO: NA

KEGG:

id description
K16750 BLOC1S2; biogenesis of lysosome-related organelles complex 1 subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599322.2 True 1215 mRNA 0.47 5 27010229 27023274

Neighbor

gene id symbol gene type direction distance location
prkaa2 prkaa2 coding downstream 168496 26822337 ~ 26900172 (-)
LOC118945904 NA coding downstream 489374 26520805 ~ 26520855 (-)
LOC110521628 LOC106584226 coding downstream 565163 26376325 ~ 26445066 (-)
pigc pigc coding downstream 640179 26366888 ~ 26370050 (-)
itpa itpa coding downstream 698182 26307586 ~ 26312047 (-)
bsnd bsnd coding upstream 53523 27076797 ~ 27078221 (-)
si:dkeyp-51f12.2 NA coding upstream 72492 27095766 ~ 27098459 (-)
LOC110521640 LOC106584214 coding upstream 134275 27157549 ~ 27180815 (-)
LOC110521641 LOC106584215 coding upstream 163290 27186564 ~ 27196880 (-)
LOC110522773 NA coding upstream 175167 27198322 ~ 27202122 (-)
G2218193 NA non-coding downstream 37045 26972943 ~ 26973184 (-)
G2218188 NA non-coding downstream 42933 26967072 ~ 26967296 (-)
G2218186 NA non-coding downstream 44146 26965620 ~ 26966083 (-)
G2218185 NA non-coding downstream 45044 26963487 ~ 26965185 (-)
G2218181 NA non-coding downstream 50320 26959508 ~ 26959909 (-)
G2218366 NA non-coding upstream 51390 27074664 ~ 27076730 (-)
G2218427 NA non-coding upstream 89325 27112599 ~ 27118548 (-)
G2218421 dhcr24 non-coding upstream 97761 27121035 ~ 27122661 (-)
G2218428 NA non-coding upstream 101191 27124465 ~ 27124794 (-)
G2218118 NA other downstream 119618 26888889 ~ 26890611 (-)
G2217824 NA other downstream 668734 26268346 ~ 26341495 (-)
G2217805 prrc2c other downstream 772831 26236685 ~ 26237398 (-)
G2217605 NA other downstream 1089984 25917354 ~ 25920245 (-)
G2213647 NA other downstream 3810823 23197647 ~ 23199406 (-)
G2219594 NA other upstream 821600 27844874 ~ 27845401 (-)
G2219602 NA other upstream 840130 27863404 ~ 27864068 (-)
lnx1 lnx1 other upstream 1350022 28307617 ~ 28382340 (-)
G2221180 NA other upstream 2445369 29468643 ~ 29473675 (-)

Expression


Co-expression Network