bsnd (bsnd)


Basic Information

Item Value
gene id bsnd
gene name bsnd
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 27076797 ~ 27078221 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599323.2
GAACCTCCTTCTTTCCCTCACCTTCAGTAGTATCTGACCCAGAGCATAACATAGCCTTAGCTAAGCTCCATACCAAGGTGGAGTGGGTTTGGTTCAGACTTCATTGGTCAGAGTAGCAGCATGGTGGAGGGTAAGCCGTATCGGTATGGTCTGATCGCGGCGGGGATGTGTGTGTTGTTAGTCGGTCTGTTCGTTATGACTCAGGAGCGACCTCACATCTACGCAACACTCTGCTCTCTGGGGATCACCATGGTCACCCTTGGCACCGCGTGGAGCCTCTGCCAGTGCTACCCTAAGGTGGTGTTGATCTCTCAGAGCCTGGAGGAGAGGGGAGCCAGGGACAGCATGGATGCTGCTGCAGGCGAGAAAAACATCagTGTTACACTGGCTGGTTTCCATGATAACAAGGTCAGCCctgccctgtctgtccctctggtcCTCCAGCTCCACTCTTCCCACAGCTGTCCCATACTACACCTGGCTTGACCTGAAATAAACATCTTTTATGGATTTTA

Function

symbol description
bsnd Enables chloride transmembrane transporter activity. Predicted to be involved in chloride transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in basolateral plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in pronephric duct. Human ortholog(s) of this gene implicated in Bartter disease; Bartter disease type 4a; and sensorineural hearing loss. Orthologous to human BSND (barttin CLCNK type accessory subunit beta).

NR:

description
barttin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599323.2 True 515 mRNA 0.53 3 27076797 27078221

Neighbor

gene id symbol gene type direction distance location
bloc1s2 bl1s2 coding downstream 53523 27010229 ~ 27023274 (-)
prkaa2 prkaa2 coding downstream 235064 26822337 ~ 26900172 (-)
LOC118945904 NA coding downstream 555942 26520805 ~ 26520855 (-)
LOC110521628 LOC106584226 coding downstream 631731 26376325 ~ 26445066 (-)
pigc pigc coding downstream 706747 26366888 ~ 26370050 (-)
si:dkeyp-51f12.2 NA coding upstream 17545 27095766 ~ 27098459 (-)
LOC110521640 LOC106584214 coding upstream 79328 27157549 ~ 27180815 (-)
LOC110521641 LOC106584215 coding upstream 108343 27186564 ~ 27196880 (-)
LOC110522773 NA coding upstream 120220 27198322 ~ 27202122 (-)
LOC100136211 LOC106584216 coding upstream 147278 27225499 ~ 27235345 (-)
G2218366 NA non-coding downstream 67 27074664 ~ 27076730 (-)
G2218193 NA non-coding downstream 103613 26972943 ~ 26973184 (-)
G2218188 NA non-coding downstream 109501 26967072 ~ 26967296 (-)
G2218186 NA non-coding downstream 110714 26965620 ~ 26966083 (-)
G2218185 NA non-coding downstream 111612 26963487 ~ 26965185 (-)
G2218427 NA non-coding upstream 34378 27112599 ~ 27118548 (-)
G2218421 dhcr24 non-coding upstream 42814 27121035 ~ 27122661 (-)
G2218428 NA non-coding upstream 46244 27124465 ~ 27124794 (-)
G2218467 NA non-coding upstream 124389 27202610 ~ 27202812 (-)
G2218118 NA other downstream 186186 26888889 ~ 26890611 (-)
G2217824 NA other downstream 735302 26268346 ~ 26341495 (-)
G2217805 prrc2c other downstream 839399 26236685 ~ 26237398 (-)
G2217605 NA other downstream 1156552 25917354 ~ 25920245 (-)
G2213647 NA other downstream 3877391 23197647 ~ 23199406 (-)
G2219594 NA other upstream 766653 27844874 ~ 27845401 (-)
G2219602 NA other upstream 785183 27863404 ~ 27864068 (-)
lnx1 lnx1 other upstream 1295075 28307617 ~ 28382340 (-)
G2221180 NA other upstream 2390422 29468643 ~ 29473675 (-)

Expression


Co-expression Network