LOC110520953


Basic Information

Item Value
gene id LOC110520953
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 31251582 ~ 31254143 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473061.2
CTTTAATATTTAATCCTGCTTAGCCAAACACAAAACGTATAATTCACATTCAGATTGGTTACGAATTCTCACGTTTAAGTGCTGAAGTACTTGAAAAGGAGTAAacgttcatttttttttttttttgcagaagtTTCTGTTTTTCATACTTGCAGACGTTTTCATCGATTCTCCATAGCTGAAGAGActaaggatttaaaaaaaaaatttttttttacacctgcaCTTCGCTGCAAAGTCGTAGTTTTGTCGCAGCCCTCATTAAAACACGAAAGGTGAAGAGTTCTACAAGGTGGCCATCTGAGGTTAGACACTGTGCTGCTCTGTCAGAGACCACAAAATGCCAACAAGTGAAGTTGAGCCAATTTCCTCCATTTCAACTTGAGAAGCACCCAGGGAGAGGATGACATCACTGCGGTGGCCGGTAGAATGCAGACTAAGGCGGCTGTGGACTCGGGCGGCTGCAGATACAGAGGACCACAGCATGGGGGATCTTACTCCCACGGTGAAGGAAGAGAACATTAGATTAAAATCATCCAGGAATAATGACTGTCTGTCATCAAGATGTTGCTCAAACTTTTAATTAAAAGCAGAAATAGTAACTCTTTATATGGCCAGTATAACACTTAGtttgagaggaaagagaaaggaaagggaaagggggatacctagtcagttgtataactgaatgcattcatttgaaatgtcttccacatttaaccagACAGAGAATGCTACCCAAATGTCACCTTTTTGCCTTTATAGGGCactagggtatagggtgccattttgaacgCAATAGATtgtagagaagacaggagaagataGGAGAAGACTGCCTTTAATGATCTTCAACAAATTTGTCACCATTAGCTAACTCTTCCAAACAAAATGCGTTTGCATttcataaatataatatataccacTTAGCCGGCTCTTTTATCCTAACGTCACTTTTTTTGAGTGGAAACAGCGCTGTTGTAAAAAAGGCCATTTTTTATGTTGCACTACAATCTCCTTCTGGATCCTGTGTgtactgcctctgcctctctctctctctctctctctctctgatttaaCAGCATGTGTTATGAGAATAAAAGTTTTCACGTGTtctgaaaataaacattttg
>TU2542854
TACGAATTCTCACGTTTAAGTGCTGAAGTACTTGAAAAGGAGTAAacgttcatttttttttttttttgcagaagtTTCTGTTTTTCATACTTGCAGACGTTTTCATCGATTCTCCATAGCTGAAGAGActaaggatttaaaaaaaaaatttttttttacacctgcaCTTCGCTGCAAAGTCGTAGTTTTGACCACAAAATGCCAACAAGTGAAGTTGAGCCAATTTCCTCCATTTCAACTTGAGAAGCACCCAGGGAGAGGATGACATCACTGCGGTGGCCGGTAGAATGCAGACTAAGGCGGCTGTGGACTCGGGCGGCTGCAGATACAGAGGACCACAGCATGGGGGATCTTACTCCCACGGTGAAGGAAGAGAACATTAGATTAAAATCATCCAGGAATAATGACTGTCTGTCATCAAGATGTTGCTCAAACTTTTAATTAAAAGCAGAAATAGTAACTCTTTATATGGCCAGTATAACACTTAGtttgagaggaaagagaaaggaaagggaaagggggatacctagtcagttgtataactgaatgcattcatttgaaatgtcttccacatttaaccagACAGAGAATGCTACCCAAATGTCACCTTTTTGCCTTTATAGGGCactagggtatagggtgccattttgaacgCAATAGATtgtagagaagacaggagaagataGGAGAAGACTGCCTTTAATGATCTTCAACAAATTTGTCACCATTAGCTAACTCTTCCAAACAAAATGCGTTTGCATttcataaatataatatataccacTTAGCCGGCTCTTTTATCCTAACGTCACTTTTTTTGAGTGGAAACAGCGCTGTTGTAAAAAAGGCCATTTTTTATGTTGCACTACAATCTCCTTCTGGATCCTGTGTgtactgcctctgcctctctctctctctctctctctctctgatttaaCAGCATGTGTTATGAGAATAAAAGTTTTCACGTGTtctgaaaataaacattttgccGAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473061.2 False 1133 mRNA 0.39 3 31251590 31254143
TU2542854 True 999 lncRNA 0.39 2 31251582 31254084

Neighbor

gene id symbol gene type direction distance location
LOC118945813 NA coding downstream 328705 30916844 ~ 30922903 (-)
uchl5 LOC106584153 coding downstream 349939 30886628 ~ 30901651 (-)
LOC110521699 LOC106584146 coding downstream 714235 30468619 ~ 30537355 (-)
LOC110521697 LOC106584145 coding downstream 1259513 29893802 ~ 29992077 (-)
LOC110521698 NA coding downstream 1290715 29959053 ~ 29960875 (-)
LOC110521709 LOC106584156 coding upstream 28861 31283004 ~ 31287087 (-)
LOC110521710 LOC106584157 coding upstream 156328 31410471 ~ 31453380 (-)
LOC110521712 LOC106584159 coding upstream 249417 31503560 ~ 31633299 (-)
gfi1ab LOC106584164 coding upstream 530189 31784332 ~ 31796285 (-)
LOC110521718 LOC106584166 coding upstream 545640 31799783 ~ 31894827 (-)
G2223430 NA non-coding downstream 22897 31228461 ~ 31228693 (-)
G2223429 NA non-coding downstream 23962 31227363 ~ 31227628 (-)
G2223281 yo84 non-coding downstream 128306 31122987 ~ 31123284 (-)
G2223273 NA non-coding downstream 131173 31120146 ~ 31120417 (-)
G2223266 NA non-coding downstream 134142 31117219 ~ 31117448 (-)
G2223497 NA non-coding upstream 27068 31281211 ~ 31282318 (-)
G2223508 NA non-coding upstream 36906 31291049 ~ 31291275 (-)
G2223509 NA non-coding upstream 37140 31291283 ~ 31291568 (-)
G2223511 NA non-coding upstream 39989 31294132 ~ 31294339 (-)
G2223513 NA non-coding upstream 40818 31294961 ~ 31295220 (-)
G2221180 NA other downstream 1777915 29468643 ~ 29473675 (-)
lnx1 lnx1 other downstream 2869315 28307617 ~ 28382340 (-)
G2219602 NA other downstream 3387522 27863404 ~ 27864068 (-)
G2219594 NA other downstream 3406189 27844874 ~ 27845401 (-)
LOC110521640 LOC106584214 other downstream 4071202 27157549 ~ 27180815 (-)
G2223487 NA other upstream 20577 31274720 ~ 31275143 (-)
G2224948 NA other upstream 1167589 32421732 ~ 32422047 (-)
G2226519 NA other upstream 2374979 33629122 ~ 33629894 (-)
LOC110521741 LOC106584188 other upstream 2445737 33686041 ~ 33710890 (-)
G2226745 NA other upstream 2555236 33809379 ~ 33809894 (-)

Expression


Co-expression Network