LOC110521699 (LOC106584146)


Basic Information

Item Value
gene id LOC110521699
gene name LOC106584146
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 30468619 ~ 30537355 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599482.2
AGGGTTACTTGTGTTTTAAACATGTGACTGGGTGAGAAAGGGGgtaaaagggagagaggagagctaaaAAAGACCGTGTCTGCTGTTTCACCTATTGCAATTTGGCTCTCCCTTTCTCTGACAGCGCTGCGGAGTAGGCGGGTCAAGCAGAGCCCGGTGCTGGCGTGGACtttataaaataatatttaacCACTGGCCAGAGATACTTAAACATCCGGTGAAGCAATACCCACCTGCATTCCTCCGTAGTTGCCTTCCTGCCAGTCGCCCACTGGTGTTTCCAACCCGAGGCGCGCACGCATTCCCTCACCAAGCGGAATTGCGCCCGCTCTCTCCGTGGATACTTTAATTTAGTAATTATCCCCGGAAATGTCAAAAACTCTGCTTCCAGGAAGGTTAAAGTATTCCCGGATAATCGTACCTCTATGAAAAGCTTTTTTCTACCAAACTTCCTCAGTGGGCCGGAGCGATAGGAAGGATTGCTAAGGCGCAGCGCAGCCCGACTTGTCGAATCGTTTTCCTTCTATTGCTCATCGGATGTTGTGGAGTGTTGTGGATCTCGTCCAATTCATAACTCATTCGCACCGATGAACGTTTTGGCAGTTCTATGGGCATATCCGCTGATTCAGCAAGATAATGGGAGACGCTGAGTTTAACTTTGTCTGCTGTTCTGAATCGCGGTCATCCGGGGGAGGTGAGGGAATGCAGATCCACCTGTCATCCCAGAGGAGGTATAAGCTCACGTGTGGGAATCCCTTCCACTGCTGAtcccttccctctttccctccctccctccctccctccctcaacctcTGATGGCTCTATGGGGCTTTCTGATCCTGCACTGCTGGGTCTGGTTCTGGCTCTTGACCGGGGCCCCTGCATTGGCCAGCCTGCCCCACGACCGCCCTGGGGGGCCCCTGGACTGGCTGCTGTCCGACAAGGGCCCCTTCCACCACTCCCAGGAATACACAGACTTCGTCGAGAGGAACCGGCAGGGCTTCTCCACCCGCTACAAGATATACAGGGAGTTTGGGAGGTGGAAGGTGAACAacctggctgtggagaggagagacttCCTGGAGTCGCCGTTGCCCCTGACGCCAGAGTTCATCCGTAACATCCGTCTACTGGGTCGGAGACCCACCACCCAGCTtatcactgacaacctgatcaGGAAGTATGGGACTCACTTTCTGCTGTCGGCCACACTGGGAGGGGAAGAGGCCTTAGCGATATTTGTGGACAAGAGGAAGCTGAGTAAGAAGCCCGAGGTGAGCGACTACTCTGGCAACTCGTCCAGTGTTACTCTGGAGGTTCTGCACCAGTTGGCTGCCTCCTACTTCATCGACAGAGAGAGCACTTTGCGCAAGCTGCACCACATCCAGATAGCATCCACAGCCATCAAGGTAACAGAGACCCGGACAGGCCCTCTCGGATGCAGTAACTATGACAACCTTGATTCTGTCAGCTCTGTTCTGGTTCAGAGTCCGGAAAACAAAGTCCACTTGCAAGgccTACAGGTTATCCTGCCAGACTACCTGCGGGACAGTTTTGTCCAGGCTGCTCTCAGTTACATCGCCTGTAACGTGGAAGGGGGCTTCATCTGTAAGGACAATGACTGCTGGTGCAAGTGTGACCCCAAGTTCCCAGAATGCAACTGTCCCTACATGGACATCCAAGCCATGGAGGACAGCCTGCAGAGAATCACTGAGACATGGGGGACACTTTACAAGGAGTTTGAGGACTCAGATGAGTTCAAGACCTTTCTGACGAGGCTCCCGCAGAACTTCTTCCTGAACGTGACGACAATCCAGCACCTGTGGTCGTTGGATGGCGTGTTCCAGTGGCGCTACGAGCAGCTGGAGAACAGCATGAGAGTGCTCTTCAGACGAGCCCAGAGAGTGGTGTTCAAGCTATTCAGCCTCAGCAAGAGGTGTCAGAGGCAGCCTCACATCCGTCTACCCAGAGAACTGCCCCAGTCCTACTGGCTGAGTCACTTCCAGTCTCTCCTCTACTGTTCTGAAAACAACCAGCTGGGTTCGTTCTCTGAAGAGCTCCACAGCTGTACCTGCAGCTACGAGCACAGCCCTTGCCAGCTGTCCCCGCCATGTGCCATCGGAGAGGGCCCCGCCTGCGCAGCCTGCGCCCTAGACAACCACACCCGCTGTGGAAGCTGCAACCCTGGATACGGCCTAACCCAGGGGGTCTGCAGACCCATGGTGGCTGACTCTACAGAGAACTACCTGGGCTttgagacagacctacaggacCTGGAGCTGAGATACCTTCTACAGAGGGCTGACCGTAGGCTGgagGTCCACGCCATCTTCATCAGTAATGATATGCGTCTGAACAGCTGGTTTGACCCTTCCTGGAGGAAGAGGATGCTGCTGACTCTGAAGAGCAACAAGTACAAGTCCAACCTGGTCCACATGCTGCTGGGCGTGTCTCTCCAGATCTGCCTGACCAAGAACAGCACCCTGGAGCCTGTCCTCACCCTCTACATCAACCCCTTTGGAGGAAGCCACTCTGAGAGCTGGTACATTCCCGTCAGTGAGAACAGCTTCCCGGACTGGACAGCCACCAAACTGGACCTGCCCCTGGAGTGCTTTAACTGGACCCTGACGCTGGGCAACAAGTGGAAGACCTTCTTCGAGACTATCCACATCTACCTGCGGAGCCGGATAAAGACGCAAGGCGGTGGAGGCCCGGCAGGGGCGGTGAACGACAGCCTCTACTATGAGCCATTAGAAATTCTGGATTCTTCTCGGAATCTGGGCTACATGAAGATCAACAGCATCCAGGTGTTTGGCTACAGTATGCACTTTGACCCAGAAGCGATCCGCGACCTGATCCTGCAGCTGGACTACCCGCACACCCAGGGTTCCCAGGACACGGCCTTGCTGCAGCTGCTGGAGATCAGGGACCGGGTCAACCGACTGTCCCCTCCAGGTCAGCAGAGACTGGACCTGTTCTCCTGTCTGCTCAGACACCGGCTCAAACTGACCGCCAGCGAGGTGGTCCGCATACATGCCTCACTGCAGGCCTTTAGCAACCGCCTGCCCAACTCTCTGGATTACGAGACAACCAAGCTGTGTAGTTAACAGTTACTAGGGGACGAATGGGGGACGTTACAGATAAACGGCTACAAGGGTGAACTATTGGACAGCAGAATGGTGTACTGGTACAGTATTTTGGCTTTCAGTGGTTTGTTGATTCTCTGGATTACAAGACTGTAAAACTATGTGCTAAATGGAGCAGTTGGATGAGAAGGACAACTGAATAATGTTGTTTGGCTTTCAGTTGTGTGGCAACTCAATGACTTGGGAGGTGCTGATAGCCGGTGCTTTTTGGTCGAGAGAAGTCACACGCAAACTCTGACATCTGTAAACAAAAGCAGATCTAGAAATTGATATATTTAACACTCTCTCCACATCCATTTGACCATCTTGTTTAAATTCAACCCTTCtcatttatacagtatatactgaagCCAACTGGAGGAACTTTTTAAGAAACATGGTACAGTCTGTTTGTTTGTAACTCTTTTATATGTTATTTTGCTTATGTGACCGTGCACTTTCCATAATGACCAGAATACAGTGGTGTCAGTCAGTTTTGTAGATGACTTGTTATTAAAACATAATGGATTAACAA

Function

NR:

description
BMP/retinoic acid-inducible neural-specific protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599482.2 True 3660 mRNA 0.52 9 30468619 30537355

Neighbor

gene id symbol gene type direction distance location
LOC110521697 LOC106584145 coding downstream 476542 29893802 ~ 29992077 (-)
LOC110521698 NA coding downstream 507744 29959053 ~ 29960875 (-)
LOC110521696 LOC106584092 coding downstream 731214 29710512 ~ 29737405 (-)
LOC110521695 LOC106584091 coding downstream 795780 29670113 ~ 29672839 (-)
LOC110521694 LOC106584144 coding downstream 817225 29634764 ~ 29651394 (-)
uchl5 LOC106584153 coding upstream 349273 30886628 ~ 30901651 (-)
LOC118945813 NA coding upstream 379489 30916844 ~ 30922903 (-)
LOC110520953 NA coding upstream 714235 31251582 ~ 31254143 (-)
LOC110521709 LOC106584156 coding upstream 745649 31283004 ~ 31287087 (-)
LOC110521710 LOC106584157 coding upstream 873116 31410471 ~ 31453380 (-)
G2222320 NA non-coding downstream 35610 30432794 ~ 30433009 (-)
G2222274 NA non-coding downstream 65492 30402924 ~ 30403127 (-)
G2222271 NA non-coding downstream 70005 30398383 ~ 30398614 (-)
G2222265 NA non-coding downstream 78020 30390286 ~ 30390599 (-)
G2222262 NA non-coding downstream 82179 30385923 ~ 30386440 (-)
G2222503 NA non-coding upstream 4559 30541914 ~ 30560702 (-)
G2222541 NA non-coding upstream 36698 30574053 ~ 30574262 (-)
G2222558 NA non-coding upstream 49457 30586812 ~ 30587027 (-)
G2222569 NA non-coding upstream 57624 30594979 ~ 30595199 (-)
G2222574 NA non-coding upstream 75048 30612403 ~ 30612677 (-)
G2221180 NA other downstream 994944 29468643 ~ 29473675 (-)
lnx1 lnx1 other downstream 2086344 28307617 ~ 28382340 (-)
G2219602 NA other downstream 2604551 27863404 ~ 27864068 (-)
G2219594 NA other downstream 2623218 27844874 ~ 27845401 (-)
LOC110521640 LOC106584214 other downstream 3288231 27157549 ~ 27180815 (-)
G2223487 NA other upstream 737365 31274720 ~ 31275143 (-)
G2224948 NA other upstream 1884377 32421732 ~ 32422047 (-)
G2226519 NA other upstream 3091767 33629122 ~ 33629894 (-)
LOC110521741 LOC106584188 other upstream 3162525 33686041 ~ 33710890 (-)
G2226745 NA other upstream 3272024 33809379 ~ 33809894 (-)

Expression


Co-expression Network