G2217720 (LOC106584277)


Basic Information

Item Value
gene id G2217720
gene name LOC106584277
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 26148105 ~ 26152511 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2536648
ACAGTCAACCCATTATAATATCAAGCGTTAGATGAACACAAAATGTACATACATTGACATTCCACTTCATTAATTTGACATTACAGATGAAGGattacacaataacacaacagatTAAAGTTAGAATTCAGTGTATCAAGCTGGTGAGATCTTGTGAAGTAGCGTTTGAGTCTGCAGACTTTGTCTTTGAATGTACAGAGGCGGAGACGCCCAGACTAGTGGGCACAGTTCCAAACGGACTCCTAGCTCCAACCcctgggcccatagggctctgatcaaaagtagagcattatgtagggaatatggtggcatGAAAAGTCTAAACTTTCCCTCTGATAGGGTGGAATGTCAGCCATATTGCTTTGATTGGGCATAACATGTCCAGACATTCCCTGGTGAGTAGATAGATAACAAAAAAACTGAAGAACAACAATGCGTTCTTCCTTATTGCGATGAGAACCATGATTGCTTTTGGCTGGGTACAGGAAGCAGTTTCTGGGGAAGCCATGCCATTGGTCAAATCGTACCAATTCAAGAACCACTGACTGGTTAGCTCTAGTCTCTACTACTGGATTATTGCagaataaatacagtatgtatgaaATAGATCAGAGAGAGCTACTCAATGGATTATTTACAACAGTCAGAGAAATAGAGCTGCTACTGATGTAGACCATCCCTCAGAACAGTACTGAAGACTAATCAAGATCAGCTGATCATGTGTAGCTACACTCACTGCATGGCAACATATGACCAAATCCTCCTCAGCTAAAGACTTCAACAAATGCATGTTTGGTGTGGAGTCATACTTGAGCCTGGATGCTACAGAAGACTAGATGAGCGAGGGGAGGTAGAGTTCCAGGAAAGAGAGGGGCGGCTGAGTCcgggggagtagagggaggaggtAGTGGTTCACCAAAATGAAAGATCAACAGTGAATCGCAACTGAAGAACGGAGAAGAGGTAATTGAGTCTGACTCTTCtgtgagcacagagagagaggaaaagacagtaaagagagaatgagaaaagagagacagcgagaaaaATATTAAATAGAGtgaggatgaaagagagagacatggctAATAAGCTGCTCCTCCATATTTAATCAGAGCGGAGGTGTTTGAGTGGTTGGTCTCAACACACACCTCTTCCCAGTTTCTCTCAGCTACAGCATAATCCACTCAtctgagaggagatgagaggaggacaggagagagagagagaacgaggagagagagagaaaacgagagagagagaaagactattTATTATTAATCCGAGTCAACAATAGACTGTTGATTAGTGTCTGTGCGGGATATTTACAATGTGCCATCAACAACAGCCAAACGTCAATACCTGCTATGGCATAAAATTGCTGCTGTCTGtgtaaacacacagaaacacattgtAAACACCCAGGACAGCTGAGAACTGGCTCACACGCACATTGCACCAGAGAATGTACATTCATAGAGATTGGAGGCCATGGTGCAGGTGCACCAGAAGTCAGAGCAGAGAGCAGTTTAGCAGTAGGGCAGTTAAGGACAGGGTGCAAAGTACTTCGCCACAAGATCCACCCCACACCCAACTTTTGTTCAGGGCACACAGCATGATTACACCATTACTACAGCTGGCCTCACTCAgtaaaatgtctgtgtgtgtcagttacACCTGTAAACAAAACAgtacagaagaaaacagcaaaccgTCTTTGACATTCACTGTGTGTTCTCTTCCTGAAAGGTAAAAAAGTCTATTCTACTTCAATCTCTGGGCAAGAACTAGAAAACCTGCCCGCTCTCCTGTCTTCCCTCCAACCTGTTCAACCGGTTGCAACCCTGGCCGTTGCACAACTAATCAGACAGTCACAATAAAGCTTCAACTCTCAATGCTGATATGAAGAGGATCACTATGTACCTCCAGGATGACGTCTCAGAGCCATGGATACGGAGAGATGACGTGGTCTGGTCAGCCTAGCCAGAGGTTTAACACATTAAAAGGTCATGGAATAATCAACTACAGGTTTGATGTCAGCGTTGCTGTTAAGTTGTTGGGGAACCTAATCTGGAGTGAAAACCATGCCTCCTGTCTCTGGTTAAACCATCCTCACCAGGTAATTATTATTGAGCATGCAGCAATCTGTAGAAAACTGGAATTATTTCTCAAGACCCGCAAAAACCCATTCAgggtatatatactgaacaaaaataaaaatgcaacatgtaaagtgttggtcccatgtttcacaagctgaaataaaatatcccagaaatgttccatacacacaaaaagcttatttctctcaaattttgtgcacaaatgtttaCATCCCAATTAGTGgggatttctcctttgccaagataatccatccacctgtcaggtgtggcatatcaagaagctgattaaacagaatgatcattaaacaggtgcaccttgtgctggggacaataaatggccactaaaatgtacagttgtgtcacacaacacattgccacagatgtctcaagatggagcatgcaattggcatgatgattgcaggaatgtccaccagagctgttgccagataattaaatgttaatttctctaccataagccacctccaacatcatttgagagaatttggcagtacgtccaaccggcttcacaaccgcagaccatgtggcctgcccaggacctccacattcagcttcttcacctgtggaatCGTCAGAGAACAGTcactggacagctgatgaaactgaggagtatttctgtccataataaagcactttCGTGGGGAAAAACATATTCTGATTGgctaggcctggctccccagtgagtgggcCTGGCTCCCTTGTGTGTGAGCCTATGCCAGGGTTCATCAATTAGATTTAGCCGGGGGTCGTTTTTTTTCCTGAAGCGAATGGTCGGCGGGCCGGAAcacaattacaaatcatttgtagactgcagaTTGACTAAACagatatgtttgactaaaacataatggTTTCAAACCTGGCTCACATTTGTATAACATcacgtctctctattatgcgtgggaatacttgggaacaaatttcttcaattaaaatcacttggggCTGATTTCCTTTTTATTTTACACAGTCTTTTGTATCCAACCATGCAAATTCAAAAAAAATTTGCTCAGAAAACTTAGGGGATAAAATGTGTCCGCCTGCCGCCAGTTAAGGAACCCTGgcatatgccctcccaggcccacccatggctgcgcccttgcctagtcatgtgaaatccatagattagggcctaatgactttatttcaattgactaacttccttatatgaactgtaactcagtaaaatcgctgaaattgttgagtttatatttttgttcagtgtatatttcaCAGTGGGAAATAAAAAAGACATACCATTCAATTTTCATCCTTACACACCTTAACATTTTAAAATAGGTCAATACAAAATTAATCCTCCATAAAATATGCTCTTTTCAGAGCGACCCGCAGACACCATAATCAATTTAAGTTTTAATCTATTGCTGTCATTTTCCCCTCTAACGTTGTGTCTGCCCAGCAGCACCCGGCTCAGccccaccagaccagaccacaagAACACCAGCACCCTGAGGGGTGCGGCCAGGACCAGGTGGGCCAGCAAGAAGCGGGCACACATGGCTGCGCGGGTGGCGTGCCCCGAGGGGAAGGAGAAGCGGTCCACGGAGAAGGTGGCGAACATGTCCATGCGGTTGTGGGACGGGCGGCGCCGACGGACGACAGCTTTCACGATGCCAACCAGGATCAGGTCTATAAC

Function

NR:

description
PREDICTED: presqualene diphosphate phosphatase-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2536648 True 3798 lncRNA 0.44 4 26148105 26152511

Neighbor

gene id symbol gene type direction distance location
LOC100305228 prdx6 coding downstream 15168 26127536 ~ 26132937 (-)
LOC110521616 LOC106584280 coding downstream 174192 25971768 ~ 25973913 (-)
LOC110521615 tnfl6 coding downstream 205741 25938771 ~ 25942364 (-)
LOC110521612 LOC106584284 coding downstream 342453 25779306 ~ 25805652 (-)
LOC110521609 LOC106584282 coding downstream 465050 25656346 ~ 25683055 (-)
itpa itpa coding upstream 155075 26307586 ~ 26312047 (-)
pigc pigc coding upstream 214377 26366888 ~ 26370050 (-)
LOC110521628 LOC106584226 coding upstream 223814 26376325 ~ 26445066 (-)
LOC118945904 NA coding upstream 368294 26520805 ~ 26520855 (-)
prkaa2 prkaa2 coding upstream 670753 26822337 ~ 26900172 (-)
G2217694 NA non-coding downstream 89654 26058063 ~ 26058451 (-)
G2217037 NA non-coding downstream 238031 25909761 ~ 25910074 (-)
G2217035 NA non-coding downstream 238688 25908995 ~ 25909417 (-)
G2217011 NA non-coding downstream 277059 25870811 ~ 25871046 (-)
G2217010 NA non-coding downstream 277379 25870476 ~ 25870726 (-)
G2217763 NA non-coding upstream 27861 26180372 ~ 26234465 (-)
G2217789 NA non-coding upstream 68914 26221425 ~ 26283767 (-)
G2217800 NA non-coding upstream 77813 26230324 ~ 26230665 (-)
G2217795 prrc2c non-coding upstream 97602 26250113 ~ 26252078 (-)
G2217838 NA non-coding upstream 221247 26373758 ~ 26380496 (-)
G2217605 NA other downstream 227860 25917354 ~ 25920245 (-)
G2213647 NA other downstream 2948699 23197647 ~ 23199406 (-)
G2213654 NA other downstream 2968494 23178506 ~ 23179611 (-)
LOC110521564 LOC106584326 other downstream 3146857 22982517 ~ 23008109 (-)
G2212908 LOC106613883 other downstream 4237369 21907963 ~ 21910736 (-)
G2217805 prrc2c other upstream 84174 26236685 ~ 26237398 (-)
G2217824 NA other upstream 115835 26268346 ~ 26341495 (-)
G2218118 NA other upstream 736378 26888889 ~ 26890611 (-)
LOC110521640 LOC106584214 other upstream 1020742 27157549 ~ 27180815 (-)
G2219594 NA other upstream 1692363 27844874 ~ 27845401 (-)

Expression


Co-expression Network