LOC110521616 (LOC106584280)


Basic Information

Item Value
gene id LOC110521616
gene name LOC106584280
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 25971768 ~ 25973913 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021599297.2
TTTGCCTCCACGCTGGAAGAGTCAGTATATACACAGAGCCAGAGTGGTGTACTGTGAGCAGGGGAGCTGAAGCAAGTTATAGCACCTAGAGCGTCTCATTCTGAGACCGTTTAAAAACGGTGAACAAAAGTGAAAGAAGGACTTTGAAGAATGTATACATCGTTCTGAAAATAGCGCTGCAGCTGAATATTGTATTTGTTTGCGCGGTAGGCTACAAGCAGGAGTGCAAGTTGTTACATTTGTGTAGCGGCACGCTTCTATTCCAGAAACTCTTGCTTCGGCTTCGGAGGTTATAAGGATTTCCCGACCTAAAAGATGGAAACTACCTTCTATGATGACTCGCTCAACTCTTTCTCCCAGCATGAGAAACCGGACTACGGATACAACCCCAAAGCACTGAAACACAGCATGACACTGAACCTGGCCGACCCAACCAGCACACTCAAACCTCACCTCCGGGCTAAAGCCAGCGACATCCTCACCTCCCCTGACGTGCAGCTCCTCAAACTGGCCTCCCCAGAGTTGGAGCGGCTCATCATCCAGTCTAGCAACGGCCTGATCACCACCACACCTACCCCGACGCAGTTCCTCTGCCCAAGGAACGTAACCGATGAGCAGGAGGGCTTTGCCGAAGGATTTGTTAGAGCACTGGCGGAGCTCCACCATCAACACGTCTTGCCCAATGCACCCGGGGTCCCAGTCACATCCGCTGGGCAGACAAGTATCAACAACCAAACAATACTCCCACCTGTTTCCGCCTTGACCGGGAGCAGTGTTTATAACAACAACATGACCATGCGCTCTGAGTCGCCTGTCTACGAAGACCTGAACACGTTCACCCCGGCTATCACCACCAACTCAGCCCTGGGTTACACCACCTCAGCCCCAGCTATGAGCTTTCCCTCTGCCCCGCCACAGCTCCCAGTCTATGGGCAGCAGTCTCACCCCCACCCCAGGCTCACTGCCCTGAAAGAGGAGCCCCAGACGGTGCCTGAGATGCCTGGGgagaccccccctctctcccccatcgaTATGGAGAATCAGGAGAGGATCAAAGCCGAGAGGAAGCGCATGAGGAACCGCGTCGCCGCCTCCAAGTGCAGGAAGCGGAAGCTGGAGCGCATCTCCCGGCTGGAGGACAAGGTGAAGAACCTGAAGACTCAGAACTCCGACCTGGCTTCCACAGCAAATATGCTGAGGGAACAGGTCGCCCAGCTCAAACAGAAGGTGATGAACCATGTCAACAGCGGCTGTCAACTCATGCTTACGCAGCAGCTCCAGACCTTCTGAGGAGGAAAGGACACTTGGAGAagaatagagagaaagatttTGAACGAAAAGGACAAATCGTTTATAATTAACTGTCTGGCTGTGTCTTCGTGGCATTGTGACAGGGTGAACGGGACAGTAACAGCACGAGACTGGCGGGAGGGGACCGGGGCTGGTTGCCTCTTACTAGGTGCCTCGCAGGACACTGTTGCACGGAGGAGTTGGGGCTCTGGACAGAGCAGAGCGCGCGATAAAAATCGCTGGTGCactagagagaaagaaacagcaACAAATAGGACAAATGGATGTTTTGGTTCGTGTTTTTAATTGACTTGAAATTTGTTGGCTTTGACTAAGCTGTGCTTTTACGCATTGACCTTCTGTGTAATTCAGTATTAGAAGAAAGACAAAGTGCAGTAGAGAACTTAAAACTGCCTGGAGCCAAAGGAGAGGGTGTGTACTCTAAACAGATTACAAAAAGCTGCCCAACTTCTGActtacaatgtactttttattctTAGTTATATTGAGTTAGAACACACATTTCAAGAGTTACTTGTTTTTTTTCCAAATGTTTTTTAATGGGGTTCATTGTTATTATCTGTATATAAGATCAACCTGGAGTACTTACATTTactatttgtaaaaaataaataaaaatacagtatCAGTTTGTTCATTTTATGAGCACTTCAGAAACAAATAGATATTTAAGAAATgtaataaaccatctgaactgaA
>XM_021599298.2
AGATAAGCTTTGCCTCCACGCTGGAAGAGTCAGTATATACACAGAGCCAGAGTGGTGTACTGTGAGCAGGGGAGCTGAAGCAAGTTATAGCACCTAGAGCGTCTCATTCTGAGACCGTTTAAAAACGGTGAACAAAAGTGAAAGAAGGACTTTGAAGAATGTATACATCGTTCTGAAAATAGCGCTGCAGCTGAATATTGTATTTGTTTGCGCGGTAGGCTACAAGCAGGAGTGCAAGTTGTTACATTTGTGTAGCGGCACGCTTCTATTCCAGAAACTCTTGCTTCGGCTTCGGAGGTTATAAGGATTTCCCGACCTAGTAAGAAACTTTTCTCcgagttgtacaactgaaagaaggagagagggcagaaACATTCTTCTCTGTCAGTCATGAGAAACCGGACTACGGATACAACCCCAAAGCACTGAAACACAGCATGACACTGAACCTGGCCGACCCAACCAGCACACTCAAACCTCACCTCCGGGCTAAAGCCAGCGACATCCTCACCTCCCCTGACGTGCAGCTCCTCAAACTGGCCTCCCCAGAGTTGGAGCGGCTCATCATCCAGTCTAGCAACGGCCTGATCACCACCACACCTACCCCGACGCAGTTCCTCTGCCCAAGGAACGTAACCGATGAGCAGGAGGGCTTTGCCGAAGGATTTGTTAGAGCACTGGCGGAGCTCCACCATCAACACGTCTTGCCCAATGCACCCGGGGTCCCAGTCACATCCGCTGGGCAGACAAGTATCAACAACCAAACAATACTCCCACCTGTTTCCGCCTTGACCGGGAGCAGTGTTTATAACAACAACATGACCATGCGCTCTGAGTCGCCTGTCTACGAAGACCTGAACACGTTCACCCCGGCTATCACCACCAACTCAGCCCTGGGTTACACCACCTCAGCCCCAGCTATGAGCTTTCCCTCTGCCCCGCCACAGCTCCCAGTCTATGGGCAGCAGTCTCACCCCCACCCCAGGCTCACTGCCCTGAAAGAGGAGCCCCAGACGGTGCCTGAGATGCCTGGGgagaccccccctctctcccccatcgaTATGGAGAATCAGGAGAGGATCAAAGCCGAGAGGAAGCGCATGAGGAACCGCGTCGCCGCCTCCAAGTGCAGGAAGCGGAAGCTGGAGCGCATCTCCCGGCTGGAGGACAAGGTGAAGAACCTGAAGACTCAGAACTCCGACCTGGCTTCCACAGCAAATATGCTGAGGGAACAGGTCGCCCAGCTCAAACAGAAGGTGATGAACCATGTCAACAGCGGCTGTCAACTCATGCTTACGCAGCAGCTCCAGACCTTCTGAGGAGGAAAGGACACTTGGAGAagaatagagagaaagatttTGAACGAAAAGGACAAATCGTTTATAATTAACTGTCTGGCTGTGTCTTCGTGGCATTGTGACAGGGTGAACGGGACAGTAACAGCACGAGACTGGCGGGAGGGGACCGGGGCTGGTTGCCTCTTACTAGGTGCCTCGCAGGACACTGTTGCACGGAGGAGTTGGGGCTCTGGACAGAGCAGAGCGCGCGATAAAAATCGCTGGTGCactagagagaaagaaacagcaACAAATAGGACAAATGGATGTTTTGGTTCGTGTTTTTAATTGACTTGAAATTTGTTGGCTTTGACTAAGCTGTGCTTTTACGCATTGACCTTCTGTGTAATTCAGTATTAGAAGAAAGACAAAGTGCAGTAGAGAACTTAAAACTGCCTGGAGCCAAAGGAGAGGGTGTGTACTCTAAACAGATTACAAAAAGCTGCCCAACTTCTGActtacaatgtactttttattctTAGTTATATTGAGTTAGAACACACATTTCAAGAGTTACTTGTTTTTTTTCCAAATGTTTTTTAATGGGGTTCATTGTTATTATCTGTATATAAGATCAACCTGGAGTACTTACATTTactatttgtaaaaaataaataaaaatacagtatCAGTTTGTTCATTTTATGAGCACTTCAGAAACAAATAGATATTTAAGAAATgtaataaaccatctgaactgaA

Function

NR:

description
transcription factor AP-1-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K04448 JUN; transcription factor AP-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021599297.2 False 2010 mRNA 0.49 2 25971768 25973905
XM_021599298.2 True 2039 mRNA 0.49 2 25971768 25973913

Neighbor

gene id symbol gene type direction distance location
LOC110521615 tnfl6 coding downstream 29404 25938771 ~ 25942364 (-)
LOC110521612 LOC106584284 coding downstream 166116 25779306 ~ 25805652 (-)
LOC110521609 LOC106584282 coding downstream 288713 25656346 ~ 25683055 (-)
LOC110521606 ipo13 coding downstream 487907 25429088 ~ 25483861 (-)
LOC110521604 LOC106584290 coding downstream 564608 25392026 ~ 25407160 (-)
LOC100305228 prdx6 coding upstream 153623 26127536 ~ 26132937 (-)
itpa itpa coding upstream 333673 26307586 ~ 26312047 (-)
pigc pigc coding upstream 392975 26366888 ~ 26370050 (-)
LOC110521628 LOC106584226 coding upstream 402412 26376325 ~ 26445066 (-)
LOC118945904 NA coding upstream 546892 26520805 ~ 26520855 (-)
G2217037 NA non-coding downstream 61694 25909761 ~ 25910074 (-)
G2217035 NA non-coding downstream 62351 25908995 ~ 25909417 (-)
G2217011 NA non-coding downstream 100722 25870811 ~ 25871046 (-)
G2217010 NA non-coding downstream 101042 25870476 ~ 25870726 (-)
G2217007 NA non-coding downstream 103583 25867875 ~ 25868185 (-)
G2217694 NA non-coding upstream 84150 26058063 ~ 26058451 (-)
G2217720 LOC106584277 non-coding upstream 174192 26148105 ~ 26152511 (-)
G2217763 NA non-coding upstream 206459 26180372 ~ 26234465 (-)
G2217789 NA non-coding upstream 247512 26221425 ~ 26283767 (-)
G2217800 NA non-coding upstream 256411 26230324 ~ 26230665 (-)
G2217605 NA other downstream 51523 25917354 ~ 25920245 (-)
G2213647 NA other downstream 2772362 23197647 ~ 23199406 (-)
G2213654 NA other downstream 2792157 23178506 ~ 23179611 (-)
LOC110521564 LOC106584326 other downstream 2970520 22982517 ~ 23008109 (-)
G2212908 LOC106613883 other downstream 4061032 21907963 ~ 21910736 (-)
G2217805 prrc2c other upstream 262772 26236685 ~ 26237398 (-)
G2217824 NA other upstream 294433 26268346 ~ 26341495 (-)
G2218118 NA other upstream 914976 26888889 ~ 26890611 (-)
LOC110521640 LOC106584214 other upstream 1199340 27157549 ~ 27180815 (-)
G2219594 NA other upstream 1870961 27844874 ~ 27845401 (-)

Expression


Co-expression Network