G2217789


Basic Information

Item Value
gene id G2217789
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 26221425 ~ 26283767 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2536726
TCAAATCCAGATCAATGCAGATACTCTTTCAAATAATTTTATTACGTCAGATTAACATTACAGTATTTCACAGTTTTTCATTGTAATGACAGAGTATAGTACATCATTACAGATCAATATTTACACCTCAAAtaaattacattaaaaaaaaagaaatgatGATGTAGGGGTTATTGTATACAGATATGCTGGACACTGCTGTCATCACATTAGGCAGTGTTACACCCAGGGTCTTGCATAGACCTTTCAGGGGGCAGGTACTCAAAATGAAAAAACAAACATACTATCTGCCTCTGTAGCAATTTTTTagcataggcctatttatttctGCAACAACTCACTCATCACAAATTATAAGCAAGCATGTAAGTTACAGTGCCTCGAATTGGGAAAATAAGGTAGGCTATCAGCTGATAATTGATGTAAATatactagttagctagctagctaaatcacAAATCGGTACAAAAATTATCTTCAATGTTAATAAATAATAAATTCACAATACAGCCTATATTCATAATCTTCTAACTCGTGTTATACTGCATGGCTGACTGGCTAGTGGCTTGTGTGAGCATTTTTAGTAGGCCTATATGGTGTTCAGCTGGAGTCCAGACTATGTTccgtgcttaatttgtaaatcagGAGGTGCAGGAACAAAAAGTGAGCGCGAAAGGGGAGTGGCCTGGGGAGCTCTGAGGTACCAGAACGcattgcaaaaaaatattttaatgctgaataaaaatataaaacgtaACGTGTAAaagttccatatgcacaaaaagcttatttctctcaaattcaaatcaaatgttatttgtcacatgtgccgaatacaacaggtattgtattaccgtgaaatgcttacttacaagcccttaaccaacaataaagttcaagaaatagttaatTTACTaaattgtgcacaaatgtgttcacatccctgttaatgagtatttctcctttgccaagataatcaatctatgtgacaggtgtggcatatcaagaagctgattaaacagcatgatcattacacaggtacaccttgtgctggggacaataaaaggccagttttgtcacacaacacaataccagtctcaagttttgagagagagagtacaATTGGCTTGcagagatgttgccagagaattgaatgttcatttctctaccataagcagcatccaaagtcattttagagaatttagtagtatgtccaaccggcctcacaaccgcaaaccacatGCCGGGCCAGAACCTCAGCCCGTACATGCCAGAGCCACAGTGGGAGGTGACCCAGAGAGGGACAGAGTCAATCAAGG
>TU2536728
GTCAGATTAACATTACAGTATTTCACAGTTTTTCATTGTAATGACAGAGTATAGTACATCATTACAGATCAATATTTACACCTCAAAtaaattacattaaaaaaaaagaaatgatGATGTAGGGGTTATTGTATACAGATATGCTGGACACTGCTGTCATCACATTAGGCAGTGTTACACCCAGGGTCTTGCATAGACCTTTCAGGGGGCAGGTACTCAAAATGAAAAAACAAACATACTATCTGCCTCTGTAGCAATTTTTTagcataggcctatttatttctGCAACAACTCACTCATCACAAATTATAAGCAAGCATGTAAGTTACAGTGCCTCGAATTGGGAAAATAAGGTAGGCTATCAGCTGATAATTGATGTAAATatactagttagctagctagctaaatcacAAATCGGTACAAAAATTATCTTCAATGTTAATAAATAATAAATTCACAATACAGCCTATATTCATAATCTTCTAACTCGTGTTATACTGCATGGCTGACTGGCTAGTGGCTTGTGTGAGCATTTTTAGTAGGCCTATATGGTGTTCAGCTGGAGTCCAGACTATGTTccgtgcttaatttgtaaatcagGAGGTGCAGGAACAAAAAGTGAGCGCGAAAGGGGAGTGGCCTGGGGAGCTCTGAGGTACCAGAACGcattgcaaaaaaatattttaatgctgaataaaaatataaaacgtaACGTGTAAaagttccatatgcacaaaaagcttatttctctcaaattcaaatcaaatgttatttgtcacatgtgccgaatacaacaggtattgtattaccgtgaaatgcttacttacaagcccttaaccaacaataaagttcaagaaatagttaatTTACTaaattgtgcacaaatgtgttcacatccctgttaatgagtatttctcctttgccaagataatcaatctatgtgacaggtgtggcatatcaagaagctgattaaacagcatgatcattacacaggtacaccttgtgctggggacaataaaaggccagttttgtcacacaacacaataccagtctcaagttttgagagagagagtacaATTGGCTTGcagagatgttgccagagaattgaatgttcatttctctaccataagcagcatccaaagtcattttagagaatttagtagtatgtccaaccggcctcacaaccgcaaaccacatGCCGGGCCAGAACCTCAGCCCGTACATGCCAGAGCCACAGTGGGAGGTGACCCAGAGAGGGACAGAGTCAATCAAGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2536726 False 1319 lncRNA 0.38 2 26221425 26283767
TU2536728 True 1274 lncRNA 0.38 2 26221425 26283722

Neighbor

gene id symbol gene type direction distance location
LOC100305228 prdx6 coding downstream 88488 26127536 ~ 26132937 (-)
LOC110521616 LOC106584280 coding downstream 247512 25971768 ~ 25973913 (-)
LOC110521615 tnfl6 coding downstream 279061 25938771 ~ 25942364 (-)
LOC110521612 LOC106584284 coding downstream 415773 25779306 ~ 25805652 (-)
LOC110521609 LOC106584282 coding downstream 538370 25656346 ~ 25683055 (-)
itpa itpa coding upstream 23819 26307586 ~ 26312047 (-)
pigc pigc coding upstream 83121 26366888 ~ 26370050 (-)
LOC110521628 LOC106584226 coding upstream 92558 26376325 ~ 26445066 (-)
LOC118945904 NA coding upstream 237038 26520805 ~ 26520855 (-)
prkaa2 prkaa2 coding upstream 539497 26822337 ~ 26900172 (-)
G2217720 LOC106584277 non-coding downstream 68914 26148105 ~ 26152511 (-)
G2217694 NA non-coding downstream 162974 26058063 ~ 26058451 (-)
G2217037 NA non-coding downstream 311351 25909761 ~ 25910074 (-)
G2217035 NA non-coding downstream 312008 25908995 ~ 25909417 (-)
G2217011 NA non-coding downstream 350379 25870811 ~ 25871046 (-)
G2217838 NA non-coding upstream 89991 26373758 ~ 26380496 (-)
G2217991 NA non-coding upstream 284077 26567844 ~ 26618056 (-)
G2218006 NA non-coding upstream 323756 26607523 ~ 26607926 (-)
G2218063 NA non-coding upstream 436480 26720247 ~ 26795798 (-)
G2218069 NA non-coding upstream 443842 26727609 ~ 26743028 (-)
G2217605 NA other downstream 301180 25917354 ~ 25920245 (-)
G2213647 NA other downstream 3022019 23197647 ~ 23199406 (-)
G2213654 NA other downstream 3041814 23178506 ~ 23179611 (-)
LOC110521564 LOC106584326 other downstream 3220177 22982517 ~ 23008109 (-)
G2212908 LOC106613883 other downstream 4310689 21907963 ~ 21910736 (-)
G2218118 NA other upstream 605122 26888889 ~ 26890611 (-)
LOC110521640 LOC106584214 other upstream 889486 27157549 ~ 27180815 (-)
G2219594 NA other upstream 1561107 27844874 ~ 27845401 (-)
G2219602 NA other upstream 1579637 27863404 ~ 27864068 (-)
lnx1 lnx1 other upstream 2089529 28307617 ~ 28382340 (-)

Expression


Co-expression Network