G2218063


Basic Information

Item Value
gene id G2218063
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 26720247 ~ 26795798 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2537035
ATAATAATACGTTGTGTGTACTCAATATGGCTAGTTAGAGAAACATAGAGTACAGGTGTACTGTAGGATATTATTCATACAAGTAGTCTACTGAACCTTCATTAAAGCCATCCTGTGTCTATCAGGCAGGTGAGAGAAGACAAAGAGATTAGGCGCGCACACGTCACATGCGTAGTGATCACCCGGAACCAGCTGTCATTGGGATGTGTTTAATAGGAACTGTAATACATGGTGGAGATGTAAATCAACAGAAAATAAAAGTCCTCTAAAAATCCACTGTAGAATGCTGTTGTATTcataaagataaaaaataatGTGTCAATTTACATTAAGAAACCGCTATCTGAGGTAAGGTTAAAATATGTCTAGAAATGTTACGTAATCAAACAGCATTTTTTTCCCTTTTTAGTCCACttcctcatcttcttcttctattGTCCAAACGTCGTTATTAATCAGTTGTCAGTCCAGAGAAGTCTAATTACACAGAGATTCTGGCCATAAAATAGGGAGTCATTGGCATCACAGTTGATGTAGTACTAgcagagacagacggacggatagaccggccgacagacagacatggaggcAGACAGCTGAGCAGGGCTAGGGGCTGATGACAGACATACAGCTGTAGGGagtgtctggtgtggttgtgatGATGGGTAATGCTCCCGTCACTCAGACTGAGAGATTATATGACGCACAGACAGGAGGATGGTATGACTGTACGAGGTTACAGGGCACATGGATATTGATCAACAAAGGACTGCAGTGTAGACGAGGTCTGAGTTAGGGAAAGACACTTATAGGATCATAGACCAAACAACGTCAGGGGTTGAGAGAGCAACAGAaacctggacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagagacatgccATGACATGAGTTGGTTGGTCGTTTGGGCTCAAGACATTTTTGCATATTTCAAGTTCAAAGTCTTGTACAAACacacgaacaaacacacacatacatcacacaCATCATGTACGCAGCGTGAATGATAAGAAC
>TU2537034
ATAATAATACGTTGTGTGTACTCAATATGGCTAGTTAGAGAAACATAGAGTACAGGTGTACTGTAGGATATTATTCATACAAGTAGTCTACTGAACCTTCATTAAAGCCATCCTGTGTCTATCAGGCAGGTGAGAGAAGACAAAGAGATTAGGCGCGCACACGTCACATGCGTAGTGATCACCCGGAACCAGCTGTCATTGGGATGTGTTTAATAGGAACTGTAATACATGGTGGAGATGTAAATCAACAGAAAATAAAAGTCCTCTAAAAATCCACTGTAGAATGCTGTTGTATTcataaagataaaaaataatGTGTCAATTTACATTAAGAAACCGCTATCTGAGGTAAGGTTAAAATATGTCTAGAAATGTTACGTAATCAAACAGCATTTTTTTCCCTTTTTAGTCCACttcctcatcttcttcttctattGTCCAAACGTCGTTATTAATCAGTTGTCAGTCCAGAGAAGTCTAATTACACAGAGATTCTGGCCATAAAATAGGGAGTCATTGGCATCACAGTTGATGTAGTACTAgcagagacagacggacggatagaccggccgacagacagacatggaggcAGACAGCTGAGCAGGGCTAGGGGCTGATGACAGACATACAGCTGTAGGGagtgtctggtgtggttgtgatGATGGGTAATGCTCCCGTCACTCAGACTGAGAGATTATATGACGCACAGACAGGAGGATGGTATGACTGTACGAGGTTACAGGGCACATGGATATTGATCAACAAAGGACTGCAGTGTAGACGAGGTCTGAGTTAGGGAAAGACACTTATAGGATCATAGACCAAACAACGTCAGGGGTTGAGAGAGCAACAGAaacctggacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagacagaggagatgtTGGTATTGCTTGATACCTTCTGGTAGCCTAACTGAAGCCTGCCTATTTTATGGCACGGAAGTCCTGCGGACAGAATgatcattgttgttgttgttgttattattattatttacaaaaTGAGTTTGGCAAACCAACGATCAGGTCTCTTAAAGCCATGTGAATGTGCAACTCCAGTAGAGCTGACAGTAGAGCGTCTTGAtggatttataaaataaaaactcaATTTCCCCTTGTCTGTTTTAATCGATATTGTACAAAAGCTATTATAGAGAATGAGCAGTTCAATCACAGAATCAGTTAGTTTGGCAACATCCATCCGAAGGCGGAGGTGCCTGGTAATTTGGCAATGTTCGTCCATGCCAGGCGGTGCCCGTTAGGCTGGCAACATCCATGCCCCGCTGAGTCCATTCCCTCTGAAGCCTTCCCTCTGAATCTGTCTGAGAAGAGACATTTGGCAAAAcactgtgtcggtgtgtgtgtgtgtgagtagctCCCAGAGAGTCTGTTTCTGCATAGTCATCCAGCAGACGCTCACATGAAGGTGAAACACCCAAACAGCCAATCAGATGCCAAGATCCCAATAAACTGGCTAATCAAAAATAAGGATCCCAGCATACCATTCCGGCCTCGTCCCACAGGATCCACTCGCTACAGACACTCATTTGGTCCATGTCTGATAACACTGTGTGAGTTAGGAAGGGAGACAACACTTGGCCCAGTCCCCTTTTGGCAGCATAGTCTCTAGCAACGtttgatggagggagagagagagagagacggagagatgaatgaatgaaaagagagtagagggagtagatGGAGCGTTCTATCCTTTGTTAGAGGGGTGGCCAGGCTGCTGCTTGAGaggagtaacacacacacacacacacacacatcgggtTGGTTGGTCAGCGTTGGTTGGTCAGTCCAGTGTCCAGTgtctctctttatgtagatttgtgttgtctcccttgtcatggtgtgtgttttgtccttttAATCCCAACAATCTCACAGCGACATGTTTAGTTATTGTACCTACCAGCTGTAACACCTGTCCTGAGAACACCAGAATCCAGACGACTGTAGAATACTGTTAAATACTTCTGAATACTGCAGAATACCACACGACTGCTACACTGCTGTAC
>TU2537033
ATAATAATACGTTGTGTGTACTCAATATGGCTAGTTAGAGAAACATAGAGTACAGGTGTACTGTAGGATATTATTCATACAAGTAGTCTACTGAACCTTCATTAAAGCCATCCTGTGTCTATCAGGCAGGTGAGAGAAGACAAAGAGATTAGGCGCGCACACGTCACATGCGTAGTGATCACCCGGAACCAGCTGTCATTGGGATGTGTTTAATAGGAACTGTAATACATGGTGGAGATGTAAATCAACAGAAAATAAAAGTCCTCTAAAAATCCACTGTAGAATGCTGTTGTATTcataaagataaaaaataatGTGTCAATTTACATTAAGAAACCGCTATCTGAGGTAAGGTTAAAATATGTCTAGAAATGTTACGTAATCAAACAGCATTTTTTTCCCTTTTTAGTCCACttcctcatcttcttcttctattGTCCAAACGTCGTTATTAATCAGTTGTCAGTCCAGAGAAGTCTAATTACACAGAGATTCTGGCCATAAAATAGGGAGTCATTGGCATCACAGTTGATGTAGTACTAgcagagacagacggacggatagaccggccgacagacagacatggaggcAGACAGCTGAGCAGGGCTAGGGGCTGATGACAGACATACAGCTGTAGGGagtgtctggtgtggttgtgatGATGGGTAATGCTCCCGTCACTCAGACTGAGAGATTATATGACGCACAGACAGGAGGATGGTATGACTGTACGAGGTTACAGGGCACATGGATATTGATCAACAAAGGACTGCAGTGTAGACGAGGTCTGAGTTAGGGAAAGACACTTATAGGATCATAGACCAAACAACGTCAGGGGTTGAGAGAGCAACAGAaacctggacagacagacagacagacagacagacagacagacagaggagatgtTGGTATTGCTTGATACCTTCTGGTAGCCTAACTGAAGCCTGCCTATTTTATGGCACGGAAGTCCTGCGGACAGAATgatcattgttgttgttgttgttattattattatttacaaaaTGAGTTTGGCAAACCAACGATCAGGTCTCTTAAAGCCATGTGAATGTGCAACTCCAGTAGAGCTGACAGTAGAGCGTCTTGAtggatttataaaataaaaactcaATTTCCCCTTGTCTGTTTTAATCGATATTGTACAAAAGCTATTATAGAGAATGAGCAGTTCAATCACAGAATCAGTTAGTTTGGCAACATCCATCCGAAGGCGGAGGTGCCTGGTAATTTGGCAATGTTCGTCCATGCCAGGCGGTGCCCGTTAGGCTGGCAACATCCATGCCCCGCTGAGTCCATTCCCTCTGAAGCCTTCCCTCTGAATCTGTCTGAGAAGAGACATTTGGCAAAAcactgtgtcggtgtgtgtgtgtgtgagtagctCCCAGAGAGTCTGTTTCTGCATAGTCATCCAGCAGACGCTCACATGAAGGTGAAACACCCAAACAGCCAATCAGATGCCAAGATCCCAATAAACTGGCTAATCAAAAATAAGGATCCCAGCATACCATTCCGGCCTCGTCCCACAGGATCCACTCGCTACAGACACTCATTTGGTCCATGTCTGATAACACTGTGTGAGTTAGGAAGGGAGACAACACTTGGCCCAGTCCCCTTTTGGCAGCATAGTCTCTAGCAACGtttgatggagggagagagagagagagacggagagatgaatgaatgaaaagagagtagagggagtagatGGAGCGTTCTATCCTTTGTTAGAGGGGTGGCCAGGCTGCTGCTTGAGaggagtaacacacacacacacacacacacatcgggtTGGTTGGTCAGCGTTGGTTGGTCAGTCCAGTGTCCAGTGTCCAGTGTGTCTCTTTATTTCTTCCCTTTGTTGACCTGGGCGTAGAGAGGATCCTTTCCCTGCAGACAGAGATCCTTCc
>TU2537036
ATAATAATACGTTGTGTGTACTCAATATGGCTAGTTAGAGAAACATAGAGTACAGGTGTACTGTAGGATATTATTCATACAAGTAGTCTACTGAACCTTCATTAAAGCCATCCTGTGTCTATCAGGCAGGTGAGAGAAGACAAAGAGATTAGGCGCGCACACGTCACATGCGTAGTGATCACCCGGAACCAGCTGTCATTGGGATGTGTTTAATAGGAACTGTAATACATGGTGGAGATGTAAATCAACAGAAAATAAAAGTCCTCTAAAAATCCACTGTAGAATGCTGTTGTATTcataaagataaaaaataatGTGTCAATTTACATTAAGAAACCGCTATCTGAGGTAAGGTTAAAATATGTCTAGAAATGTTACGTAATCAAACAGCATTTTTTTCCCTTTTTAGTCCACttcctcatcttcttcttctattGTCCAAACGTCGTTATTAATCAGTTGTCAGTCCAGAGAAGTCTAATTACACAGAGATTCTGGCCATAAAATAGGGAGTCATTGGCATCACAGTTGATGTAGTACTAgcagagacagacggacggatagaccggccgacagacagacatggaggcAGACAGCTGAGCAGGGCTAGGGGCTGATGACAGACATACAGCTGTAGGGagtgtctggtgtggttgtgatGATGGGTAATGCTCCCGTCACTCAGACTGAGAGATTATATGACGCACAGACAGGAGGATGGTATGACTGTACGAGGTTACAGGGCACATGGATATTGATCAACAAAGGACTGCAGTGTAGACGAGGTCTGAGTTAGGGAAAGACACTTATAGGATCATAGACCAAACAACGTCAGGGGTTGAGAGAGCAACAGAaacctggacagacagacagacagacagacagacagacagaggagatgtTGGTATTGCTTGATACCTTCTGGTAGCCTAACTGAAGCCTGCCTATTTTATGGCACGGAAGTCCTGCGGACAGAATgatcattgttgttgttgttgttattattattatttacaaaaTGAGTTTGGCAAACCAACGATCAGGTCTCTTAAAGCCATGTGAATGTGCAACTCCAGTAGAGCTGACAGTAGAGCGTCTTGAtggatttataaaataaaaactcaATTTCCCCTTGTCTGTTTTAATCGATATTGTACAAAAGCTATTATAGAGAATGAGCAGTTCAATCACAGAATCAGTTAGTTTGGCAACATCCATCCGAAGGCGGAGGTGCCTGGTAATTTGGCAATGTTCGTCCATGCCAGGCGGTGCCCGTTAGGCTGGCAACATCCATGCCCCGCTGAGTCCATTCCCTCTGAAGCCTTCCCTCTGAATCTGTCTGAGAAGAGACATTTGGCAAAAcactgtgtcggtgtgtgtgtgtgtgagtagctCCCAGAGAGTCTGTTTCTGCATAGTCATCCAGCAGACGCTCACATGAAGGTGAAACACCCAAACAGCCAATCAGATGCCAAGATCCCAATAAACTGGCTAATCAAAAATAAGGATCCCAGCATACCATTCCGGCCTCGTCCCACAGGATCCACTCGCTACAGACACTCATTTGGTCCATGTCTGATAACACTGTGTGAGTTAGGAAGGGAGACAACACTTGGCCCAGTCCCCTTTTGGCAGCATAGTCTCTAGCAACGtttgatggagggagagagagagagagacggagagatgaatgaatgaaaagagagtagagggagtagatGGAGCGTTCTATCCTTTGTTAGAGGGGTGGCCAGGCTGCTGCTTGAGaggagtaacacacacacacacacacacacatcgggtTGGTTGGTCAGCGTTGGTTGGTCAGTCCAGTGTCCAGTGTCCAGTGTGTCTCTTTATTTCTTCCCTTTGTTGACCTGGGCGTAGAGAGGATCCTTTCCCTGCAGACAGAGATCCTTCc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2537035 False 1086 lncRNA 0.42 2 26720247 26795798
TU2537034 False 2082 lncRNA 0.44 2 26722054 26795798
TU2537033 False 1925 lncRNA 0.45 2 26793846 26795798
TU2537036 True 1921 lncRNA 0.45 2 26793846 26795798

Neighbor

gene id symbol gene type direction distance location
LOC118945904 NA coding downstream 199392 26520805 ~ 26520855 (-)
LOC110521628 LOC106584226 coding downstream 275181 26376325 ~ 26445066 (-)
pigc pigc coding downstream 350197 26366888 ~ 26370050 (-)
itpa itpa coding downstream 408200 26307586 ~ 26312047 (-)
LOC100305228 prdx6 coding downstream 587310 26127536 ~ 26132937 (-)
prkaa2 prkaa2 coding upstream 27466 26822337 ~ 26900172 (-)
bloc1s2 bl1s2 coding upstream 214431 27010229 ~ 27023274 (-)
bsnd bsnd coding upstream 280999 27076797 ~ 27078221 (-)
si:dkeyp-51f12.2 NA coding upstream 299968 27095766 ~ 27098459 (-)
LOC110521640 LOC106584214 coding upstream 361751 27157549 ~ 27180815 (-)
G2217991 NA non-coding downstream 102191 26567844 ~ 26618056 (-)
G2218006 NA non-coding downstream 112321 26607523 ~ 26607926 (-)
G2217838 NA non-coding downstream 339751 26373758 ~ 26380496 (-)
G2217789 NA non-coding downstream 436480 26221425 ~ 26283767 (-)
G2217795 prrc2c non-coding downstream 468169 26250113 ~ 26252078 (-)
G2218108 NA non-coding upstream 24511 26820309 ~ 26821468 (-)
G2218117 plpp3 non-coding upstream 51654 26847452 ~ 26891169 (-)
G2218148 NA non-coding upstream 98979 26894777 ~ 26895332 (-)
G2217968 NA non-coding upstream 108075 26903873 ~ 26906410 (-)
G2217824 NA other downstream 378752 26268346 ~ 26341495 (-)
G2217805 prrc2c other downstream 482849 26236685 ~ 26237398 (-)
G2217605 NA other downstream 800002 25917354 ~ 25920245 (-)
G2213647 NA other downstream 3520841 23197647 ~ 23199406 (-)
G2213654 NA other downstream 3540636 23178506 ~ 23179611 (-)
G2218118 NA other upstream 93091 26888889 ~ 26890611 (-)
G2219594 NA other upstream 1049076 27844874 ~ 27845401 (-)
G2219602 NA other upstream 1067606 27863404 ~ 27864068 (-)
lnx1 lnx1 other upstream 1577498 28307617 ~ 28382340 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G100843 NA unknown NC_053120.1 CM020917.1 37463914 ~ 37490072 (+)