LOC110487682 (LOC106588190)


Basic Information

Item Value
gene id LOC110487682
gene name LOC106588190
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 39080800 ~ 39097864 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110487682
ATGCACCCAACCCTGCGACTCAGCCACCCCCTTGTCCTCATAGAGGAGGAGATCAAGATTGACACGATGGTCCTGGCCAGGAGGAGGACCAAGACCTGGTACCACGGCAGGATTACAGAAATCAAACCAACAGGTAAGAACTCACCCAACCACCGGTTAAAAATGGAGGTGGACTTTAGCGAGAAGGGGAGGAGCATGCTGTCAGGGACACCACATAGCCTTTGACCACACCGCTTCGCTGGAGCAGCTGTACGTGGACGTGCGATTGGTGGCCAAGTTCAAGGATGTCCACCAGTCCTTGTTCTGCTCTGGCATTCTGGCTGAACTCCCCAACTGAAAGAACCGCATGAGGTTCCTGATCTTTTTTGATGACGGCACACCTTCCTATGTAGGCTTGCCGGATCTTCACATTGTTTGCAGACCATGTAAGAACAGCCTCGGACAATTGTTGTGGGAGGACATAGAGGATGAGGCCAACAGGGAGTTTATCAAGGATTACATCAAGGTGTACCCCCAACCCGCCCATGGCCCGGTACAGACCAGGCCAGCCCATCAACGTGGGGTTTGAGGGGGGTCCGGAGGAGGGTCGAGGTAGTATACAAGATAAATATGAACACGTCTACAGCCTTGGGGGACCAGTTTCGACTGCTAATACTATCCACACGACCAGCACGGCCGCTGCCAGCAAACCTCACGTCACCGCCTCAGCACCCTTAGGGAGGCCCTATGGCCAGAACCGTTCAACCGACGAGTCGTCTGTCATCACAGCTAAAGGTTCAGTCACCTTCACCCTCCACCGTTGCTGCCCAGCCTGCCTGGAATGCATCCGGTCAAAGGTTGAGGCCAAGCACCGTGGACTCAACCCGCTGCTCTGCGAGTTCCACCGCATGAAGGGCCGCCGCCGGGTCAATAacaagACGTATTTCTACATCTTCTACCAGTCGCCGTGTGGCCTCAGCCTGAGCAACAGGACTACCTTCAACAGACCCGCTGTGACTTCCTCTTCCTGGACATGTTCTGTCTGGACCCCTTTGTGTCTGTGACCACAACCCACCAACCCCGGCCATACAAGATCAACATCCTAGACCTGACGCTTGGCAGGGAGAACCGGCCGCTGTCCTGCATCAACGAACTCGGCAACATCCGGCTAATCTCAGTGATCTACAACAAGCAGCGCGTGGCGGCCAGCGGGGTCTCCCTCAACACCAGCTCAGACTTTCTGGTGTGCTGCAACTTCACCGACAGCTGcaggaacagGTCGTCATGCTCCTGTCACCAGCTGACCATCCAGGCCACAGCCGTGTCACCGGGTGGCCCTGAGGACGTCAACGTTGGCTTCGAACACAAGAGGCTGGAGAAACGGCTCTCCACAGGTATATATGAGTGTAACGCACTGTGCCGCTGTGACCCACGGTGCCAAGGGCACCTTCATCTGCACTTACACTGGGATAACTTAGGGATAATCATGAACAAGAAGAGTTTGGGGACAGAGGGCAACGAGTACGTGGTCAACCTGAACCACATAGAGGGAGCTGAGAGCAAGGAGGGTTACGAGAGTGAGACGCGCTGCTCCGACAATGAGTCAGGTTCAGAAGAAGAGTCCATAGAAGGCGTCAACAGTGAGCATGATGACTGTGATGACGAGGGCAAGGATGAGGAAGAGGGAAACCCCGAGAAAGAGCAGCGACGTATGATGATGAAGAACTCTGATGACGAAGCTGAAGAAGAACCCGATGATGATGAAAATTATGAGGACAAGGACTACGATGTCAGTGAAGATGATGGCGACTCTGACTTCAGGCACAATGTCTCCTCTATGGAGAGGAGCTACGTCACACGCAGGCATGCCAAAATACTACAGGAGGACCCAGCGAAGAAATCGGGCTCTGACGCAAAGTCTTCTGACCTGCAGGACGGTACAGCAGAGGGAAATGACAAGCAGGCCTCAAACGCTCCAAGGCGTTTCTTTGATGGCGAAGAGTCATGCTACATCATCGACGCAAATCTGGAGGGGAATGTGGGTCGCTACCTCAATcaTAGCTGCCACCCAAACCTGTTTGCGCAGAATGTTTTTGTGGACACACATGACCTTCGATTCCCCTGTGTGGCCTTCTTCACCAGCAAGCGCATCAGAGCTGGTACAGAACTGCGGTGGGAATATAAATGTGAGCTTGGTGTGAAAAGGTCGTCAAGAATCCTAAATTGTCGCTGTGATCAAGTGCAGGGAAAAGTTAAGAATGCCCTTTACATCTTCTTCCAGCTTCACCCCTGAAGTAAATTTAGGAATATACTGTAGGAGATGGTCTAGTTGTTGTATTTTAAACCATGCAGAGGTTTTTGTTCATATTACGATTCTTAAATTGTGCTTGAATAAATTAATTCTGAAGTATTGtctcctagttaaataaaaaatattgaaatGTCCTTTTCAGCATTCCTAATTTATTCTGCCCCAAATAATATTTCGTTAAACTATATTCTCACATTTTCCTTAAATGTTTCCAAAGAAAatgttttgtaaatgtattaaaccaTCAAGCAGTTGTGGAGGTCTGAACAAAGACAGTTGTGAGAGAGAAATTACGTATTTACCTGATTTGTTTGATATTCATAGTTAACGATTTATATACTTAACAAATAGTAAGACATTTCTGTTCTGTTAATGCTGTGTTTCTGTAAAGGGATGGTTTCCACTCTAGCTTCCTCCAGTTAGTCTGGGCGTATTGTCAAGAAATGGGTTTTGCGAGAGATCGCTTGAGCTGACAGTGACTTGGTGATAACCTACAGCTGGCATTCCATAGAcaatatgtggtgtgtgtgacccGAGATGGAGATAGCCTGGAAGTGTTTAGAACCATCCCTCATTGTCTCATCTTCATCcttgcatctgggaaactaagccgGGTTGGGAGTAAAACAACATCCCGTGCAGATAACCAGGAGATGAACCCAAGGTGGCTTGTGGTGCCCCCCACCCGATCCGCATGGGAGGGATGGAACCAGCCATGACTAAGCAATTTTAGTGTCAGCTATATAAGAACTCTGCATTGTCTGTAAAGGTTAAGCTCTCGGCAACACACCTTCGTGTGCGGTCGACtgcttcattattgcaataattaata

Function

NR:

description
histone-lysine N-methyltransferase SETDB1-A-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0009987 cellular process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110487682 True 3122 mRNA 0.50 15 39080800 39097864

Neighbor

gene id symbol gene type direction distance location
clk2a LOC106570085 coding downstream 6387 39059104 ~ 39074413 (-)
LOC110488444 LOC108240561 coding downstream 531940 38204743 ~ 38548860 (-)
tgfr2 tgfr2 coding downstream 932874 38117150 ~ 38147926 (-)
LOC110488472 LOC106570075 coding downstream 988284 37997250 ~ 38092516 (-)
LOC110517080 tmem42 coding downstream 1196356 37880939 ~ 37884444 (-)
cers2a LOC106570086 coding upstream 20676 39118540 ~ 39135446 (-)
celf3a LOC106570087 coding upstream 42446 39140310 ~ 39160745 (-)
rprd2a LOC106588187 coding upstream 63898 39161762 ~ 39207900 (-)
LOC110510413 ciart coding upstream 118230 39216094 ~ 39221057 (-)
mrps21 mrps21 coding upstream 132230 39149872 ~ 39234977 (-)
G2327195 NA non-coding downstream 35301 39038289 ~ 39045499 (-)
G2327201 NA non-coding downstream 42548 38991402 ~ 39038252 (-)
G2327149 NA non-coding downstream 146271 38929504 ~ 38934529 (-)
G2326842 NA non-coding downstream 161439 38919153 ~ 38919361 (-)
G2326809 NA non-coding downstream 183946 38896543 ~ 38896854 (-)
G2327251 NA non-coding upstream 6956 39104820 ~ 39105088 (-)
G2327255 NA non-coding upstream 11797 39109661 ~ 39109946 (-)
G2327256 NA non-coding upstream 12189 39110053 ~ 39110267 (-)
G2327279 NA non-coding upstream 58386 39156250 ~ 39157772 (-)
G2327347 LOC106570093 non-coding upstream 210696 39308560 ~ 39309991 (-)
G2327199 NA other downstream 23791 39054297 ~ 39057009 (-)
si:ch211-153f2.3 LOC104957086 other downstream 1806241 37268611 ~ 37274589 (-)
LOC110488406 med30 other downstream 1843875 37204063 ~ 37240288 (-)
G2323152 NA other downstream 3266199 35811050 ~ 35814601 (-)
G2327348 LOC106588182 other upstream 212578 39310442 ~ 39316952 (-)
LOC110517409 LOC106570099 other upstream 410593 39508407 ~ 39510810 (-)
G2327652 NA other upstream 449219 39547083 ~ 39554931 (-)

Expression


Co-expression Network