G2336301


Basic Information

Item Value
gene id G2336301
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493662.1
NCBI id JAAXML020000566.1
chromosome length 1797194
location 706692 ~ 731598 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2673879
GCCAcaacactgtctctgtgtgtgttctgtcatcTCATGTTTGACAGAGATAAACTAAGATTTTTTCAAATTTTTGCAACCATTACTGACAAAATaatcaaatgtaatgttttttacCAAAAACTCTACATGGAAAGCAGAAAGCTGTGATcaattaaatacaacgttaactagatattatctgtgtcatttatagcctggcacagatagtaaaactacattaaatacaacgttaactagatattatctgtgtcatttatagcctggcacagatagtaaaactacattaaatacaacgttaactagatattatctgtgtcatttatagcctggcacagatagtaaaactactgtAGCGACctgcacagacagctgtgtgttatgtgttcggctagtaggtggttgtgttgtacttaccagttcccagtgttcgcggggtccgacatgccaatcaacctgctatctgccaatcacaggaatgcctgggatgttctgatgccgggcatcctggtggttggcggagtggcgtggagggggcggggcattggaagttaaggttcagcctttgttctctctcttacgtctgggcttcacaagagaaggtcccgattggcttgtggggtatctttcatttatttggcgtgagctaaggccaaacagtagcctgtgtaaagttgctaataaaccgtcaattcgtaactcaatcctctgtctggacaattgttcctttatgatctagtcaggtcattacactacattaaatacaacgttaactagatatcatCGCCACATAACTTATGTCGAATTTAAAAGACACCGTTACCGTTAGTAATGCCTGTTACACTGTAACTTACAGGCAGCCTCACATAAAAACCTATTGGTTAACGAAGCTTTGATTATGACCAAAGTCTATAGTagtgaaaactctctctctctattctaactTACCACACATTCACATCACTGCCTCGACATGAACGTGTCCTATCAGAGCCGTTTCCTGTCCGTTAACTGTTAACAGTCTCGAGCCAAAGCTTTAACCAATGAGCTACAAGGAGGACTGACAGTCACGAGCGgtgcagcagcctctgcagcagcagcctcccccgGGTCCTAGTGCCCGCCCGGTATGACGGTTAAGATGCGATGGAACGGTTGACggagagaaaataaatcacagagaaaaTATATTGACTGATATATTGAATTGTTAAGGGAAGCTTTAGCTTTGGCTTTAATACATTCTGAAAATACTTGAAAACCAAAAGAGAAAAGAATAGTAGCCCTCCTCACAACAACAAAACCCTCACAGACCaacttcttcttctatgatataaTGGAGGTCCTCAAACCAACGTTAAAGGTGCATGGCGCCACCTACTGTTCTGGAGTGTGTTCAATCACGGTTTACACCACTCTTAAATCCTCCTACCTAACTCAGTACttctgagaaaataaaagagTCCTACTAACTTCTAATAGACCCTCCACCATCCCCCAAATCTCTtccaagtgtaatgtttactgttcatttctgattgtttatttcacttttgtttattgtctatttcacttgctttagcaATGTACACATatatttccatgccaataaagccctatgAATTGAATTCAATTGAGAGTGAGAGACAGCTCCATTATAATGTATAGGGGACATGAGTCGTCATGGTTACTCATGGTTATGTGATGAGGCAGCCCAGTTGGTTACTATTCTCTGAAAGGGGTCCAGACAGCCTGTTCCCAACAGTGGGGTCAGTGGGATTGGACaggggcccctctctctctctgactggaggagagaagtgaaatggtgtgtctcctctggtcaacaATACTCACCTTGAGAGACTCCACAGCCTCTTGGAGCTCCTTcagctgcttctctctctcctggaatctCTGCTGGACCTTCTGCTGACTCATCCCCAGCTGCCTCTG

Function

NR:

description
tripartite motif-containing protein 47-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2673879 True 1956 lncRNA 0.43 2 706692 731598

Neighbor

gene id symbol gene type direction distance location
LOC110516269 NA coding upstream 23700 666560 ~ 682992 (+)
LOC110519397 NA coding upstream 64538 640728 ~ 642816 (+)
LOC118947079 NA coding upstream 133278 516802 ~ 573414 (+)
LOC118947097 NA coding upstream 176493 527708 ~ 530199 (+)
LOC110511244 NA coding upstream 244617 454447 ~ 462075 (+)
LOC110518290 LOC106561472 coding downstream 24198 755796 ~ 800920 (+)
LOC110491257 NA coding downstream 57936 789534 ~ 892453 (+)
LOC110517712 LOC106574369 coding downstream 107941 839539 ~ 866848 (+)
LOC110499824 NA coding downstream 223179 954777 ~ 960598 (+)
LOC118947076 NA coding downstream 305759 1037357 ~ 1037794 (+)
G2336611 NA non-coding upstream 1708 685106 ~ 704984 (+)
G2336330 NA non-coding upstream 9811 666047 ~ 696881 (+)
G2336612 NA non-coding upstream 11523 694424 ~ 695169 (+)
G2336342 NA non-coding upstream 18192 686633 ~ 688500 (+)
G2336306 LOC106599393 non-coding upstream 47208 268129 ~ 659484 (+)
G2336397 LOC106587643 non-coding downstream 6171 737769 ~ 823788 (+)
G2336626 NA non-coding downstream 12780 744378 ~ 750596 (+)
G2336629 NA non-coding downstream 23002 754600 ~ 755244 (+)
G2336449 NA non-coding downstream 27164 758762 ~ 843722 (+)
G2336455 NA non-coding downstream 45749 777347 ~ 777938 (+)
LOC118947088 LOC106593566 other downstream 364615 1081089 ~ 1098264 (+)
G2336431 NA other downstream 624305 1355903 ~ 1389866 (+)
G2336736 NA other downstream 755866 1487464 ~ 1488419 (+)
G2336367 NA other downstream 846642 1578240 ~ 1581200 (+)
LOC110515277 NA other downstream 1026105 1741320 ~ 1761572 (+)

Expression


Co-expression Network