G2336364 (LOC106591196)


Basic Information

Item Value
gene id G2336364
gene name LOC106591196
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NW_023493662.1
NCBI id JAAXML020000566.1
chromosome length 1797194
location 827588 ~ 876770 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2673942
CAATAAGTTGTTCTGGTCTTACCTGTTTCTCAGTCCTCTCTGCCTCAGCTGACACTGTATCATGGCCTTTATGTTCATCCATCACACACAGCAGACAGATACACTGCTGATCGGTACGACAGtaaacctccagcagtttgtCATGATGAGAGCAGATCTTCTCCTGTAGTTGTGCGGTGGCTTTGACCAGCTTGTGCTTCTTGAAAGCAGGAGATTCATAGTGAGGTTGgaggtgagtctcacagtaagaggccagacacaccagacaggacatgagggctttctgctttctggtcCCAGTGCAGAAATCACACGccacatctccaggtccagcaTAGCACAGAGCAGGAGGGGGAGCAGCCTGGAGTCCTGGCTTCTTCAGTTTCTCCACCAGCTCAGCCAACATGTTATTTTTCCTCAGATTAGGCCTTGGAGTGAAGGTCTCTCTGCACTGAGGACAGCTATAGACCCCTTTCAGAACATCCTGATCCCAGCAGCCCTCAATACAGCTCCTACAGTAACTGTGTCCACAGGGAATAGTGACCGGCTCCTTCAgtagatccagacagacagaacaacagaactggTCCTGGTCCAGCAGATTGCCCTGTTGAGCCATTTGGATGGTTGttcactctcacacagacagacgacACAGAGACTCAGATCAGTTTCGTTTCCTCAGAAGAGAGTTAG

Function

NR:

description
PREDICTED: E3 ubiquitin/ISG15 ligase TRIM25-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2673942 True 696 lncRNA 0.50 2 827588 876770

Neighbor

gene id symbol gene type direction distance location
LOC110518290 LOC106561472 coding upstream 26668 755796 ~ 800920 (+)
LOC110491257 NA coding upstream 26670 789534 ~ 892453 (+)
LOC110516269 NA coding upstream 144596 666560 ~ 682992 (+)
LOC110519397 NA coding upstream 185434 640728 ~ 642816 (+)
LOC118947079 NA coding upstream 254174 516802 ~ 573414 (+)
LOC110499824 NA coding downstream 78007 954777 ~ 960598 (+)
LOC118947076 NA coding downstream 160587 1037357 ~ 1037794 (+)
LOC118947086 NA coding downstream 176559 1053329 ~ 1054233 (+)
LOC118947088 LOC106593566 coding downstream 204319 1081089 ~ 1098264 (+)
LOC118947084 NA coding downstream 239932 1116702 ~ 1135344 (+)
G2336529 NA non-coding upstream 2464 384477 ~ 825124 (+)
G2336397 LOC106587643 non-coding upstream 3800 737769 ~ 823788 (+)
G2336336 NA non-coding upstream 4647 697694 ~ 822941 (+)
G2336465 NA non-coding upstream 5206 822109 ~ 822382 (+)
G2336635 NA non-coding upstream 14643 812158 ~ 812945 (+)
G2336381 LOC106587644 non-coding downstream 13874 890644 ~ 901043 (+)
G2336295 NA non-coding downstream 24449 901219 ~ 986684 (+)
G2336348 NA non-coding downstream 26696 903466 ~ 905377 (+)
G2336388 NA non-coding downstream 27142 903912 ~ 964760 (+)
G2336366 NA non-coding downstream 40217 916987 ~ 920082 (+)
G2336431 NA other downstream 479133 1355903 ~ 1389866 (+)
G2336736 NA other downstream 610694 1487464 ~ 1488419 (+)
G2336367 NA other downstream 701470 1578240 ~ 1581200 (+)
LOC110515277 NA other downstream 880933 1741320 ~ 1761572 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G97244 NA non-coding CM030132.1 CM030132.1 8001486 ~ 8016073 (-)