G97244


Basic Information

Item Value
gene id G97244
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8001486 ~ 8016073 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU121240
AGTCCTCACCTGTTTCTCAGCCCTTTCTGCTGCAGCTGAGACTGTATCGTGGCCTTTATGAGCATCCATTACACACAGCAAACAGATACACGTCTGATCAGTGCGGCAATAGACCTCCAGCAGTTTCTGATGATTAGGACAGAGAACATCATCCAGACGCCCGGTGGCATCAACCAGCTTGTGCTTCTGAAAGGCAGGAGACTTGAAGTGAGGCTGGAGGTGAGACTGACAGTAAGAGGCCAGACACACCAGACAGGATTTCACAGCTCTCGTCTTTTCTTCAGTGCAGAAATCACACAACACATCTCCAGGTCCAGCAGGACTGtgaacaggaggaggaggaggggtatTTAGCCCTGTCTTCGTCAGTCTCTCCACCAGTTCAACCAGCATGATATTTCTGCGCAGTACAGGCCTCGGGGTGAAGGTCTCTCTGCACTGGGGGCAGCTGCATATACTGATGCTATCATCCTGGTCCCAGCAGCTTTTAATACAGTCCAGACAGTAACTGTGTCCACAGGGAATAGTCACTGGATCCTTCAGTGTGTCCAGACACACTGAGCAGCTGATCTGGTCCTGGAAAACTCCAGCTTCTGCCATttcactgagagactgagaggcagagagacgcAGTTCCAGTCAGGCTGTTTCAGCAGAAACG

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU121240 True 661 lncRNA 0.51 2 8001486 8016073

Neighbor

gene id symbol gene type direction distance location
AMCG00015332 LOC107559259 coding downstream 6804 7971864 ~ 7994682 (-)
AMCG00015331 NA coding downstream 39597 7958966 ~ 7961889 (-)
AMCG00015328 NA coding downstream 59502 7939137 ~ 7941984 (-)
AMCG00015330 mus81 coding downstream 79661 7915071 ~ 7921825 (-)
AMCG00015326 NA coding downstream 92560 7903578 ~ 7908926 (-)
AMCG00015342 NA coding upstream 93400 8109473 ~ 8113457 (-)
AMCG00015337 NA coding upstream 99374 8115447 ~ 8121854 (-)
AMCG00015338 NA coding upstream 110440 8126513 ~ 8131083 (-)
AMCG00015336 NA coding upstream 118216 8134289 ~ 8143347 (-)
AMCG00015341 NA coding upstream 128426 8144499 ~ 8146914 (-)
G97221 NA non-coding downstream 30729 7969597 ~ 7970757 (-)
G97134 NA non-coding downstream 181297 7819804 ~ 7820189 (-)
G97130 NA non-coding downstream 186084 7814894 ~ 7815402 (-)
G97121 NA non-coding downstream 220888 7780392 ~ 7780598 (-)
G97041 NA non-coding downstream 381969 7497942 ~ 7619517 (-)
G97395 NA non-coding upstream 52707 8068780 ~ 8069037 (-)
G97409 gng3,LOC107559409 non-coding upstream 108195 8124268 ~ 8126464 (-)
G97475 NA non-coding upstream 415850 8431923 ~ 8433316 (-)
G97536 NA non-coding upstream 580662 8596735 ~ 8598299 (-)
G97561 NA non-coding upstream 594874 8610947 ~ 8611396 (-)
G97125 NA other downstream 215044 7786087 ~ 7786442 (-)
AMCG00015305 NA other downstream 553192 7390889 ~ 7448294 (-)
AMCG00015288 NA other downstream 1077772 6917679 ~ 6923714 (-)
AMCG00015285 NA other downstream 1105059 6891235 ~ 6896427 (-)
AMCG00015283 NA other downstream 1123752 6870462 ~ 6877734 (-)
AMCG00015333 nxf1,LOC105897453,LOC108417053,LOC106603139 other upstream 53962 8070035 ~ 8091826 (-)
G97411 NA other upstream 115234 8131307 ~ 8134115 (-)
AMCG00015348 ehd1b,LOC107718765,LOC107720605,LOC106603140,LOC107548869,LOC106930329,LOC103471421,LOC103136898 other upstream 207126 8223199 ~ 8283629 (-)
AMCG00015361 NA other upstream 345541 8361614 ~ 8370031 (-)
G97455 mark2a,LOC107715377 other upstream 393914 8409987 ~ 8411882 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G206827 NA non-coding CI01000049 null 3368308 ~ 3368519 (+)
rainbow trout (Oncorhynchus mykiss) G2336364 LOC106591196 non-coding NW_023493662.1 JAAXML020000566.1 827588 ~ 876770 (+)
eurasian perch (Perca fluviatilis) G173347 NA non-coding NC_053128.1 CM020925.1 6348733 ~ 6351098 (+)