AMCG00015333 (nxf1,LOC105897453,LOC108417053,LOC106603139)


Basic Information

Item Value
gene id AMCG00015333
gene name nxf1,LOC105897453,LOC108417053,LOC106603139
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8070035 ~ 8091826 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015333
ATGCCCCCTATAAAGATCACAGCTGATGTCCCCAAGTGCAGTTTGGGAGATTACCATAAGGACAGTCGCAACATCAAGAAGCTGAAAGACCCCACCACGCGGTTCCGCCTGCTGAAGCACACGCGCCTGAATGTGGTGGCCTTCCTGAACGAGCTGCCCAAGACGCAGCACGACACCAGCTCCTTCGTAGTGGACGTCAACACCTACACTaaCACGTTACTGTCCTTCACCATCAGTGGAGTGTTTAAAGAAGTGGATGAGAAGTCTCGGGACACAGTGCGTGCGTTCTCTCGTGTGTTCATCACTGTCCCCGCAGGAAACGCTGGgctgtgTATAGTGAATGATGAGCTGTTTGTGCGGAACGCGACGACAGAGGAGATCAGACGGGCATTCGCTACGCCGGCCCCCACGCCTTCCAGCAGCCCCGTGCCCACGCTGACCGCTGCGCAGCAGGAGATGCTGTCCGCCTTCTCCCTGCAGTCCGGCATGAACCTGGAGTGGTCACAGAAGTAC
>TU121430
CGTCATTGATTTTTATTGGCCTAAGCCAGGTAATATAACACCATGCCTACATGAAGGCTCTCATGAAACTTTTTGGGTGTTACAGTACAATAACATCTAATCTATTGTGGagaaattataattgtatgtgcttagttcagtgcagaaaaGTGTGCATTTTAGATGAGAAGGTTTAGTTTACCAAAGCTGTGAGGTGCTGGAAAAGCTTTGACAGTGCACCTTGATAgtgcttgaatttgaattttgaaatgctttatgAACCCTGGTAAGAGCTCCACACCAGCACTGCCCCTGTCCACCCCCATTCTACCCCTGTCCACACCAGCCCACTGACTACAtactgcccctctctctcctgtctgtccCCGTGTCCAGTTGAAGTCAGAGAGGGATCTGGACAAGGTGAAGGGCTTCAAGCTGGAGGAGCTGTGGCTGGAGCACAATCCCCTGTGCGACCACTTCAAAGACCAGCCGTCCTATATCAGCGCCATCAGAGAGAGGTTCCCCCGACTGCTCAGACTGgaTGGTCATATCCTTCCTAGACCGATAGCGTTTGATGTTGAAGCCCCAACCACACTCCCGGCCTGCAAGGGCAGTTATTTTGGTTCGGAGGAGATTAAGAGTGTGATTCTGCGCTTCCTGCAGCAgtaCTACAATGTGTACGACTCAGGGGACAGACAGCCGCTTCTAGATGCCTATCACGATGGGGCCTCCTTCTCCCTCAGCATCCCCTTCTCCTTACAGAACCCCTCCAGGTGCAGTTTGGGAGATTACCATAAGGACAGTCGCAACATCAAGAAGCTGAAAGACCCCACCACGCGGTTCCGCCTGCTGAAGCACACGCGCCTGAATGTGGTGGCCTTCCTGAACGAGCTGCCCAAGACGCAGCACGACACCAGCTCCTTCGTAGTGGACGTCAACACCTACACTaaCACGTTACTGTCCTTCACCATCAGTGGAGTGTTTAAAGAAGTGGATGAGAAGTCTCGGGACACAGTGCGTGCGTTCTCTCGTGTGTTCATCACTGTCCCCGCAGGAAACGCTGGgctgtgTATAGTGAATGATGAGCTGTTTGTGCGGAACGCGACGACAGAGGAGATCAGACGGGCATTCGCTACGCCGGCCCCCACGCCTTCCAGCAGCCCCGTGCCCACGCTGACCGCTGCGCAGCAGGAGATGCTGTCCGCCTTCTCCCTGCAGTCCGGCATGAACCTGGAGTGGTCACAGAAGTACGTACTGCTGGACACTGTCCACAGTGGGACAGGGACCAG
>TU121431
CTCCTGGGCTCGGGTGAGTCTGCTGCTCTGGGGGCGAAGGGGTGGTGGGGGAGCTGCTGCGTTGTCTGCATATAGAACACCCTGCCTCACAGAGAGGGGGTGTCCAgctcagtccagtccagtccatcACTGTccagtgcagcacagcacagcccagcGCTGCTGAGATGCTCAGAGttagagatggagaaagagagagtcaGAAAGAAAGACTGGGGGGAGAGATGGAGCGAGGAGGGCTGGGAGAAGCTGTGCTGCTCTGAGAGTTTCCACTGTGTAGAGCCATTGAGTTTAATGCTgttgacaataataatgattgtgtgtgtgtgtgtgtgtgagagagagatatagagagtgagagagtgattGTGAGAGTGTGAGGTTGTTGCTCTGTGGTTGTGTAGTCACGCTGCTCTCCTCTGTTTCACTGTCTGACAGCGCCATCAGAGAGAGGTTCCCCCGACTGCTCAGACTGgaTGGTCATATCCTTCCTAGACCGATAGCGTTTGATGTTGAAGCCCCAACCACACTCCCGGCCTGCAAGGGCAGTTATTTTGGTTCGGAGGAGATTAAGAGTGTGATTCTGCGCTTCCTGCAGCAgtaCTACAATGTGTACGACTCAGGGGACAGACAGCCGCTTCTAGATGCCTATCACGATGGGGCCTCCTTCTCCCTCAGCATCCCCTTCTCCTTACAGAACCCCTCCAGGTGCAGTTTGGGAGATTACCATAAGGACAGTCGCAACATCAAGAAGCTGAAAGACCCCACCACGCGGTTCCGCCTGCTGAAGCACACGCGCCTGAATGTGGTGGCCTTCCTGAACGAGCTGCCCAAGACGCAGCACGACACCAGCTCCTTCGTAGTGGACGTCAACACCTACACTaaCACGTTACTGTCCTTCACCATCAGTGGAGTGTTTAAAGAAGTGGATGAGAAGTCTCGGGACACAGTGCGTGCGTTCTCTCGTGTGTTCATCACTGTCCCCGCAGGAAACGCTGGgctgtgTATAGTGAATGATGAGCTGTTTGTGCGGAACGCGACGACAGAGGAGATCAGACGGGCATTCGCTACGCCGGCCCCCACGCCTTCCAGCAGCCCCGTGCCCACGCTGACCGCTGCGCAGCAGGAGATGCTGTCCGCCTTCTCCCTGCAGTCCGGCATGAACCTGGAGTGGTCACAGAAGTACGTACTGCTGGACACTGTCCACAGTGGGACAGGGACCAG

Function

symbol description
nxf1 Enables RNA binding activity. Involved in mRNA export from nucleus. Located in cytoplasm and nuclear speck. Colocalizes with transcription export complex.

NR:

description
PREDICTED: nuclear RNA export factor 1-like

GO:

id name namespace
GO:0006406 mRNA export from nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015333 False 513 mRNA 0.57 6 8070073 8073165
TU121430 True 1271 lncRNA 0.53 10 8070035 8091826
TU121431 False 1224 lncRNA 0.55 9 8070035 8084294

Neighbor

gene id symbol gene type direction distance location
AMCG00015332 LOC107559259 coding downstream 75353 7971864 ~ 7994682 (-)
AMCG00015331 NA coding downstream 108146 7958966 ~ 7961889 (-)
AMCG00015328 NA coding downstream 128051 7939137 ~ 7941984 (-)
AMCG00015330 mus81 coding downstream 148210 7915071 ~ 7921825 (-)
AMCG00015326 NA coding downstream 161109 7903578 ~ 7908926 (-)
AMCG00015342 NA coding upstream 17647 8109473 ~ 8113457 (-)
AMCG00015337 NA coding upstream 23621 8115447 ~ 8121854 (-)
AMCG00015338 NA coding upstream 34687 8126513 ~ 8131083 (-)
AMCG00015336 NA coding upstream 42463 8134289 ~ 8143347 (-)
AMCG00015341 NA coding upstream 52673 8144499 ~ 8146914 (-)
G97395 NA non-coding downstream 998 8068780 ~ 8069037 (-)
G97244 NA non-coding downstream 53962 8001486 ~ 8016073 (-)
G97221 NA non-coding downstream 99278 7969597 ~ 7970757 (-)
G97134 NA non-coding downstream 249846 7819804 ~ 7820189 (-)
G97130 NA non-coding downstream 254633 7814894 ~ 7815402 (-)
G97409 gng3,LOC107559409 non-coding upstream 32442 8124268 ~ 8126464 (-)
G97475 NA non-coding upstream 340097 8431923 ~ 8433316 (-)
G97536 NA non-coding upstream 504909 8596735 ~ 8598299 (-)
G97561 NA non-coding upstream 519121 8610947 ~ 8611396 (-)
G97562 NA non-coding upstream 520669 8612495 ~ 8634660 (-)
G97125 NA other downstream 283593 7786087 ~ 7786442 (-)
AMCG00015305 NA other downstream 621741 7390889 ~ 7448294 (-)
AMCG00015288 NA other downstream 1146321 6917679 ~ 6923714 (-)
AMCG00015285 NA other downstream 1173608 6891235 ~ 6896427 (-)
AMCG00015283 NA other downstream 1192301 6870462 ~ 6877734 (-)
G97411 NA other upstream 39481 8131307 ~ 8134115 (-)
AMCG00015348 ehd1b,LOC107718765,LOC107720605,LOC106603140,LOC107548869,LOC106930329,LOC103471421,LOC103136898 other upstream 131373 8223199 ~ 8283629 (-)
AMCG00015361 NA other upstream 269788 8361614 ~ 8370031 (-)
G97455 mark2a,LOC107715377 other upstream 318161 8409987 ~ 8411882 (-)
AMCG00015374 NA other upstream 449362 8541188 ~ 8545795 (-)

Expression


Co-expression Network