RNA id: TU121240


Basic Information

Item Value
RNA id TU121240
length 661
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G97244
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8001486 ~ 8016073 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTCCTCACCTGTTTCTCAGCCCTTTCTGCTGCAGCTGAGACTGTATCGTGGCCTTTATGAGCATCCATTACACACAGCAAACAGATACACGTCTGATCAGTGCGGCAATAGACCTCCAGCAGTTTCTGATGATTAGGACAGAGAACATCATCCAGACGCCCGGTGGCATCAACCAGCTTGTGCTTCTGAAAGGCAGGAGACTTGAAGTGAGGCTGGAGGTGAGACTGACAGTAAGAGGCCAGACACACCAGACAGGATTTCACAGCTCTCGTCTTTTCTTCAGTGCAGAAATCACACAACACATCTCCAGGTCCAGCAGGACTGtgaacaggaggaggaggaggggtatTTAGCCCTGTCTTCGTCAGTCTCTCCACCAGTTCAACCAGCATGATATTTCTGCGCAGTACAGGCCTCGGGGTGAAGGTCTCTCTGCACTGGGGGCAGCTGCATATACTGATGCTATCATCCTGGTCCCAGCAGCTTTTAATACAGTCCAGACAGTAACTGTGTCCACAGGGAATAGTCACTGGATCCTTCAGTGTGTCCAGACACACTGAGCAGCTGATCTGGTCCTGGAAAACTCCAGCTTCTGCCATttcactgagagactgagaggcagagagacgcAGTTCCAGTCAGGCTGTTTCAGCAGAAACG

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121210 lncRNA downstream 30729 7969597 ~ 7970757 (-) True G97221
TU121110 lncRNA downstream 181297 7819804 ~ 7820189 (-) True G97134
TU121106 lncRNA downstream 186084 7814894 ~ 7815402 (-) True G97130
TU121097 lncRNA downstream 220888 7780392 ~ 7780598 (-) True G97121
TU121011 lncRNA downstream 381969 7497942 ~ 7619517 (-) True G97041
TU121429 lncRNA upstream 52707 8068780 ~ 8069037 (-) True G97395
TU121430 lncRNA upstream 53962 8070035 ~ 8091826 (-) True AMCG00015333
TU121431 lncRNA upstream 53962 8070035 ~ 8084294 (-) False AMCG00015333
TU121445 lncRNA upstream 108195 8124268 ~ 8126464 (-) True G97409
TU121449 lncRNA upstream 115234 8131307 ~ 8134115 (-) True G97411
AMCG00015332 mRNA downstream 6804 7971864 ~ 7994682 (-) True AMCG00015332
AMCG00015331 mRNA downstream 39597 7958966 ~ 7961889 (-) True AMCG00015331
AMCG00015328 mRNA downstream 59502 7939137 ~ 7941984 (-) True AMCG00015328
AMCG00015330 mRNA downstream 79661 7915071 ~ 7921825 (-) True AMCG00015330
AMCG00015326 mRNA downstream 92560 7903578 ~ 7908926 (-) True AMCG00015326
AMCG00015333 mRNA upstream 54000 8070073 ~ 8073165 (-) False AMCG00015333
AMCG00015342 mRNA upstream 93400 8109473 ~ 8113457 (-) True AMCG00015342
AMCG00015337 mRNA upstream 99374 8115447 ~ 8121854 (-) True AMCG00015337
AMCG00015338 mRNA upstream 110440 8126513 ~ 8131083 (-) True AMCG00015338
AMCG00015336 mRNA upstream 118216 8134289 ~ 8143347 (-) True AMCG00015336
TU121101 other downstream 215044 7786087 ~ 7786442 (-) True G97125
TU120782 other downstream 1079845 6917766 ~ 6921641 (-) False AMCG00015288
TU120659 other downstream 1301129 6698857 ~ 6700357 (-) True G96766
TU120625 other downstream 1616866 6377890 ~ 6384620 (-) True AMCG00015267
TU120487 other downstream 1937327 6049477 ~ 6064159 (-) False AMCG00015256
TU121448 other upstream 115234 8131307 ~ 8134115 (-) False G97411
TU121510 other upstream 393914 8409987 ~ 8411882 (-) True G97455
TU121587 other upstream 525115 8541188 ~ 8543180 (-) False AMCG00015374
TU121599 other upstream 564226 8580299 ~ 8581101 (-) False AMCG00015372
TU121952 other upstream 776035 8792108 ~ 8794774 (-) False AMCG00015393

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU234709 True 212 lncRNA 0.31 1 CI01000049 3368308 ~ 3368519 (+)
rainbow trout (Oncorhynchus mykiss) TU2673942 True 696 lncRNA 0.50 2 NW_023493662.1 827588 ~ 876770 (+)
eurasian perch (Perca fluviatilis) TU234709 True 2366 lncRNA 0.44 1 NC_053128.1 6348733 ~ 6351098 (+)
tiger barb (Puntius tetrazona) TU234709 False 372 lncRNA 0.36 3 NC_056721.1 16731346 ~ 16732884 (+)