RNA id: TU121210


Basic Information

Item Value
RNA id TU121210
length 1130
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G97221
representative True

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 7969597 ~ 7970757 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCAATTAAGATTTTTGcatctttaatatatatatatacacacacacatgtacacacactttttttttttcctttcacaataaaactcatataaatgcatgaaactctgaggccccgactatgcaaaatgtaaaaaaagttcaaggaggtgtagactttctaggcactgtatgtatgtctgtccTCTGACATAGACACAAGTATACATAGACACTCAGACTCCATAtacttacacacagacacacacaatttgcacttatacatacacagtgcacacatgtatgtataagTGTAGTGTCTATGTATACAAGAACCACATACACTCTCCACTTAATCCGTCATGAGTAACAGACTCCACACTGCAGCTGCTgggaatattattttattgcttctACTTTACACCTCTGtattatagatttaaaattgaaatctgAGAGAAATAAACTACAGTGGGTGGGGGTCACACCTGCTCCCCAGGAAAGGATCTGTCTCATCAGTGTAACGGTTCTAGGAGACCAAGATCACAACAGTAGAGTACAAGAGTCCGTTCAGtatctggaataaactccccagcgatgtggttgaagctgaaaatttgggaacatttaaaaacagcctGGATAGGATCcgtggatcacttagttataatggcctcctctcgtttgtaaactttcttatgttcgtATGTCATTATTTAAAGCTGCCACTTGGGGGCAGCAAAACCATCAGACAAAAACAGAACTGTGATGAggtgaactttcttatgttcagtAAAATACAAGACTGTACAGTACCATAGAGTACAGAACAGATCAGATCTGTAAAGTACCatagagtacagtacagtgagtgCAAGATTATGGGAGCAGGGCTggactcctcctcctctcactctctttgGTATCTTCCAGGCTGCTCCATTGTGCGTGTGTGGAGAGGGGTCTACAGCAGGGAGGGGAGCGcaggtgtgtgcgtgtttgtgggGCGAGGGGGTGCTGGTTCTGGTTCAGTCCCGTTGGGCTCACAGCAGGTCAGGCCGGTGCCATCGGGCTCCACGCTGAGCTTCTTCACCACGCCGTCTTCCACCAGCATCACATACCTGCCAAACACACAATATGGACTCCATTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121110 lncRNA downstream 149408 7819804 ~ 7820189 (-) True G97134
TU121106 lncRNA downstream 154195 7814894 ~ 7815402 (-) True G97130
TU121097 lncRNA downstream 188999 7780392 ~ 7780598 (-) True G97121
TU121011 lncRNA downstream 350080 7497942 ~ 7619517 (-) True G97041
TU120982 lncRNA downstream 561081 7408002 ~ 7408516 (-) False AMCG00015305
TU121240 lncRNA upstream 30729 8001486 ~ 8016073 (-) True G97244
TU121429 lncRNA upstream 98023 8068780 ~ 8069037 (-) True G97395
TU121430 lncRNA upstream 99278 8070035 ~ 8091826 (-) True AMCG00015333
TU121431 lncRNA upstream 99278 8070035 ~ 8084294 (-) False AMCG00015333
TU121445 lncRNA upstream 153511 8124268 ~ 8126464 (-) True G97409
AMCG00015331 mRNA downstream 7708 7958966 ~ 7961889 (-) True AMCG00015331
AMCG00015328 mRNA downstream 27613 7939137 ~ 7941984 (-) True AMCG00015328
AMCG00015330 mRNA downstream 47772 7915071 ~ 7921825 (-) True AMCG00015330
AMCG00015326 mRNA downstream 60671 7903578 ~ 7908926 (-) True AMCG00015326
AMCG00015327 mRNA downstream 72144 7888625 ~ 7897453 (-) True AMCG00015327
AMCG00015332 mRNA upstream 1107 7971864 ~ 7994682 (-) True AMCG00015332
AMCG00015333 mRNA upstream 99316 8070073 ~ 8073165 (-) False AMCG00015333
AMCG00015342 mRNA upstream 138716 8109473 ~ 8113457 (-) True AMCG00015342
AMCG00015337 mRNA upstream 144690 8115447 ~ 8121854 (-) True AMCG00015337
AMCG00015338 mRNA upstream 155756 8126513 ~ 8131083 (-) True AMCG00015338
TU121101 other downstream 183155 7786087 ~ 7786442 (-) True G97125
TU120782 other downstream 1047956 6917766 ~ 6921641 (-) False AMCG00015288
TU120659 other downstream 1269240 6698857 ~ 6700357 (-) True G96766
TU120625 other downstream 1584977 6377890 ~ 6384620 (-) True AMCG00015267
TU120487 other downstream 1905438 6049477 ~ 6064159 (-) False AMCG00015256
TU121448 other upstream 160550 8131307 ~ 8134115 (-) False G97411
TU121510 other upstream 439230 8409987 ~ 8411882 (-) True G97455
TU121587 other upstream 570431 8541188 ~ 8543180 (-) False AMCG00015374
TU121599 other upstream 609542 8580299 ~ 8581101 (-) False AMCG00015372
TU121952 other upstream 821351 8792108 ~ 8794774 (-) False AMCG00015393

Expression Profile